Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_C20
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...   182   4e-47
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe...    27   2.1  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    27   2.1  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    27   2.7  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    26   6.3  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   6.3  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   8.4  

>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score =  182 bits (444), Expect = 4e-47
 Identities = 85/195 (43%), Positives = 119/195 (61%)
 Frame = +1

Query: 145 KVKQRITEPVTKDENVPLPPVRMSSDPAPKQVKWINRQRVLVFAMRGINHRHRHLMEDIK 324
           K+K     P  +DE+    PV+              +Q+VLV + RG+ +R RHL+ D+ 
Sbjct: 6   KLKTSERAPKNEDEDEEYVPVQNGQGNKHSAGFVPIKQKVLVLSSRGVTYRQRHLLNDLV 65

Query: 325 KLMPHHKTESKMERSKNLYVVNEISEMKNCNKCILFEGRKMRDLYMWISNIPNGPSAKFL 504
            +MPH K +SK++    LY +NE++E+ NCN    FE R+  DLY+ I+  PNGP+ KF 
Sbjct: 66  SMMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFFFESRRREDLYLHIARAPNGPTVKFH 125

Query: 505 VENIYTMGELKMTGNCLRGSRPLLSFDPQFTKDPHYCLLKELLVQIFGVPNYHPKSQPFF 684
           VEN++TM EL MTGN L+GSRP+LSFD  F   PH  ++KELL Q FG+P    +S+PF 
Sbjct: 126 VENLHTMDELNMTGNALKGSRPILSFDKTFDTAPHLKVVKELLQQTFGIPKGARRSKPFI 185

Query: 685 DHVYTFMVLXNRIWF 729
           D V T  +   +IWF
Sbjct: 186 DRVCTLTIADGKIWF 200


>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 424 ILFEGRKMRDLYMWISNIPNGPSAKFLVENIYTMGELKMTG 546
           +L E RK  +  + + ++PNGPS  F + N+ T  E+   G
Sbjct: 150 VLNEDRKKTNA-LTLVHLPNGPSFYFTLSNLQTAKEISNHG 189


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 479 GILDIHIYKSLIFLPSNKMHLLQFFISLISLTTYKFLLL 363
           GIL   +YK  + L + +M L  FF S++ + T+  +++
Sbjct: 134 GILPFTMYKYTVILTALEMPLAIFFCSIVCVCTFSPIMI 172


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +1

Query: 211 MSSDPAPKQVKWINRQRVLVFAMRGINHRHRHLMEDIKKLMPHHKTESKMERSKN 375
           M + P+P  +K  N++R L  ++   N R     +++KK+     ++S  +  KN
Sbjct: 566 MEATPSPALLKKTNKRRELPSSLTKKNTRTPQRSKEVKKVPARKLSQSTKKSDKN 620


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
 Frame = +1

Query: 400 EMKNCNKCILFEGRKMRDLYMWISNIPNGPSAKFLVENIY-TMGELKMTGNCLRGSRPLL 576
           ++++  K +LFE       Y  +  I + P       N+Y    EL +  N  R ++   
Sbjct: 224 QIQSLMKSLLFEYHHENVNY--VPTIADAPLTDEQKLNLYLARNELIVLANHFRDTKE-- 279

Query: 577 SFDPQFTKDPHYC-LLKELLVQIFGVPNY 660
             DP    +P    L +  L+  FGVPNY
Sbjct: 280 --DPAIVANPFPVRLARPALINAFGVPNY 306


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 541 TGNCLRGSRPLLSFDPQFTKDPHYCLLKE 627
           T +CL G    L      + DPH+CLL+E
Sbjct: 197 TRHCLYGLDADLIMLGLLSHDPHFCLLRE 225


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 109  KFKAMVKVK-KPSKVKQRITEPVTKDENVPLPPVRMSSD 222
            K K +V V  KPS V  ++    T DEN P+  V +  D
Sbjct: 1170 KSKVVVDVSTKPSGVGHQVLLLTTDDENAPISSVLIDFD 1208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,136,053
Number of Sequences: 5004
Number of extensions: 68708
Number of successful extensions: 196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)