Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_C20
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0434 - 22904790-22904927,22905220-22905318,22905404-229054...   161   7e-40
01_01_0325 + 2631637-2631882,2632715-2632788,2632874-2633006,263...    35   0.076
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879     32   0.41 
05_01_0206 + 1487034-1489430                                           30   2.2  
01_01_0433 + 3282195-3285185                                           28   6.6  
01_01_1219 + 9858375-9858483,9859184-9859506                           28   8.7  

>02_04_0434 -
           22904790-22904927,22905220-22905318,22905404-22905472,
           22905582-22905683,22905750-22905824,22906293-22906417,
           22906511-22906589,22906933-22907074,22907200-22907441
          Length = 356

 Score =  161 bits (390), Expect = 7e-40
 Identities = 77/186 (41%), Positives = 116/186 (62%), Gaps = 26/186 (13%)
 Frame = +1

Query: 250 NRQRVLVFAMRGINHRHRHLMEDIKKLMPHHKTESKMERSKNL-YVVNEISEMKNCNKCI 426
           N+++VLV   R IN+R+RHLM+++  L+PH K +SK+E  ++    +NE+ E++NC+ C+
Sbjct: 66  NKEKVLVTCSRRINYRYRHLMQNVVSLLPHAKKDSKVESKQSKGNALNELLELRNCSSCL 125

Query: 427 LFEGRKMRDLYMWISNIPNGPSAKFLVENIYTMGELKMTGNCLRGSRPLLSFDPQFTKDP 606
            FE RK +DLY+W+   P GPS KFLV  ++TM ELK+TGN L+GSRPL++F   F + P
Sbjct: 126 FFECRKQKDLYLWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLITFSTNFDEQP 185

Query: 607 HYCLLKELLVQ-------------------------IFGVPNYHPKSQPFFDHVYTFMVL 711
           H+ L+KE+L Q                         IF  P  H K++PF DHV+ F ++
Sbjct: 186 HWQLVKEMLTQLSHVMNFMENWGNAIRDEVIHASFLIFATPKDHRKAKPFHDHVFVFSIV 245

Query: 712 XNRIWF 729
            + +WF
Sbjct: 246 DDHVWF 251


>01_01_0325 +
           2631637-2631882,2632715-2632788,2632874-2633006,
           2633091-2633172,2633471-2633580,2633659-2633751,
           2633854-2633904,2634013-2634105,2635257-2636129,
           2636204-2636316,2636436-2636448
          Length = 626

 Score = 34.7 bits (76), Expect = 0.076
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
 Frame = +1

Query: 385 VNEISEMKNCNKCILFE---GRKMRDLYMWISNIPNGPSAKFLVENIYTMGELKMTGNCL 555
           +N   +   CN C+ FE   G +M   +M+  N        FL+   +    +++     
Sbjct: 135 INVFLKWSRCNFCLFFEWAEGDQMMICHMF--NTLKEIHISFLINPAFLDESMEV----- 187

Query: 556 RGSRPLLSFDPQFTKDPHYCLLKELLVQIF 645
           + + PLLSF   F +D  + L+KE+L+ +F
Sbjct: 188 KVTNPLLSFSSNFVEDETWALVKEMLMMMF 217


>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
          Length = 696

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = +1

Query: 274 AMRGINHRH-RHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCILFE---GR 441
           A R   H   R ++ED+K  + H K   +     NL +VNE+ E K   K +L E    R
Sbjct: 262 AWRSREHEKVRAILEDMKADLDHEKKNRRRLEMINLKLVNELKEAKMSAKQLLQEYDNER 321

Query: 442 KMRDLYMWISN 474
           K R+L   + N
Sbjct: 322 KARELTEEVCN 332


>05_01_0206 + 1487034-1489430
          Length = 798

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 193 PLPPVRMSSDPAPKQVKWINRQRVLVFAMRGINHRHRHLMEDI 321
           P P    S  P+P    W  R ++L+ A RGI++ H + +  I
Sbjct: 563 PKPNGSSSPSPSPVATSWKLRIKILLDASRGIDYLHSYAVPPI 605


>01_01_0433 + 3282195-3285185
          Length = 996

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 472 NIPNGPSAKFLVENIYTMGELKMTGNCLRGSRP 570
           NI NG     L+EN  T+  L + GN LRG  P
Sbjct: 644 NILNGSIPSCLMENSSTLKILNLRGNELRGELP 676


>01_01_1219 + 9858375-9858483,9859184-9859506
          Length = 143

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +1

Query: 166 EPVTKDENVPLPPVRMSSDPAPKQVKWINRQRVLVFAMRGINHRHRHLMEDIKKLMPHHK 345
           E  T     P P V + + P   + K I  QR  +   + +  R R L++  +       
Sbjct: 73  EAGTDQPEEPKPTVSIETMPLETKQKMIMEQRAKMKLAKKLRQRRRRLVQKRRLRKKGRW 132

Query: 346 TESKMERSKNL 378
             SKM++ KN+
Sbjct: 133 PPSKMKKLKNV 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,884,258
Number of Sequences: 37544
Number of extensions: 393593
Number of successful extensions: 987
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)