Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_C13
(885 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0771 + 5917550-5917829,5918390-5918526,5918617-5918742,591... 216 2e-56
03_02_0955 - 12690405-12690842,12690940-12691130,12691208-126917... 30 2.8
09_01_0101 - 1558889-1558989,1559105-1559214,1559300-1559396,156... 29 3.8
09_04_0286 + 16400695-16401369,16401473-16401658,16402115-164025... 29 5.0
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406... 29 6.6
10_08_0003 - 13992276-13992311,13992461-13992598,13992682-139928... 28 8.7
>07_01_0771 +
5917550-5917829,5918390-5918526,5918617-5918742,
5919168-5919221,5919344-5919457,5919895-5919950,
5920017-5920058,5920580-5920655,5920765-5920836,
5920908-5921033,5921117-5921221,5921333-5921416,
5921636-5921683
Length = 439
Score = 216 bits (527), Expect = 2e-56
Identities = 116/261 (44%), Positives = 159/261 (60%), Gaps = 3/261 (1%)
Frame = +3
Query: 111 VLXXNLNXKATHSQFFKSLQXRGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPSVLEFG 290
VL +L +++HS FF SLQ RG+ L F+LADD L L +YG+YLY L++FAPS FG
Sbjct: 37 VLVDDLAVRSSHSAFFASLQGRGFDLDFRLADDPKLSLHRYGQYLYDGLVLFAPSTPRFG 96
Query: 291 GQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEE-SAAVIDHFNYDVTD- 464
G VD +I +FID D+ R IA+ECG + DE+ A VIDH NY TD
Sbjct: 97 GSVDQNSILEFIDAGHDMILAADSSASDLIRGIATECGVDFDEDPEAMVIDHINYAATDA 156
Query: 465 EGDHTRIVVSPKNLIKAPTIVGEQNTQ-PLLFEGTGLIVDKDNSLVLPILSADSTAYSYN 641
EGDHT +++ +LI++ I+G + + P+LF G G V+ NSLVL +LSA +AYS N
Sbjct: 157 EGDHT--LIAGDDLIQSDVILGSKKIEAPVLFRGIGHAVNPSNSLVLKVLSASPSAYSAN 214
Query: 642 PKSQVKEYPHAVGRKTVLIAALQARNNARIVFSGSLFFFSDEAFNSPVTKVHGDKTKSDV 821
PKS++ P G L++ +QARNNAR++ SGSL FS+ S V K G K + +
Sbjct: 215 PKSKLASPPSLTGSAISLVSVMQARNNARVLISGSLDLFSNRFLKSGVQKA-GSKIRHEK 273
Query: 822 SGNKILAIRLTEWVFGXRGRL 884
+GN+ ++WVF RG L
Sbjct: 274 AGNEQFVTETSKWVFHERGHL 294
>03_02_0955 -
12690405-12690842,12690940-12691130,12691208-12691718,
12692240-12693171,12693260-12693351,12693430-12693509,
12693568-12693621,12693734-12693850,12693949-12694194,
12694273-12694432,12694512-12694576,12694686-12694877,
12694980-12695061,12695153-12695925
Length = 1310
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = -3
Query: 403 PHSEAISLYTS--PAAALPAIRRFPPSSMNLVMASLS-TCPPN 284
P +E++ S P+AA P ++ PP ++ V++SLS PPN
Sbjct: 23 PTAESVLRVASRDPSAAAPLLQALPPDGLDDVLSSLSPASPPN 65
>09_01_0101 -
1558889-1558989,1559105-1559214,1559300-1559396,
1560462-1560537,1561577-1561666,1561972-1562070
Length = 190
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 591 SLVLPILSADSTAYSYNPKSQVKEYPHAVGRKTVLIAALQARNNARIVFSGSLFFF 758
S V+PI D T +Y +SQ +E K ++ A + N A I F+G F++
Sbjct: 114 STVVPIKRNDGTI-TYQAQSQDEEALVTAASKLNMVLASKDSNTAEISFNGCKFYY 168
>09_04_0286 +
16400695-16401369,16401473-16401658,16402115-16402575,
16402678-16402836,16402914-16403265,16403360-16403653
Length = 708
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 665 PPCSWP*DSTDCSSASKKQCSYCFQWIVILL 757
PPC +P S DC + +QC + VILL
Sbjct: 577 PPCPFPMHSEDCPYSYTRQCDHDGPIFVILL 607
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -3
Query: 391 AISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSS 278
AISLYTSP F PSS ST PP++S
Sbjct: 5 AISLYTSPPPGAVYSSEFDPSSRG-SSPPCSTAPPSTS 41
>08_02_0903 +
22438406-22438614,22439640-22440366,22440494-22440679,
22441310-22441770,22441869-22442027,22442098-22442449,
22442563-22442842,22443330-22443661
Length = 901
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 665 PPCSWP*DSTDCSSASKKQCSYCFQWIVILL 757
PPC +P S DC + +QC++ VI+L
Sbjct: 664 PPCPFPSHSEDCPYSYTRQCNHDGPIFVIML 694
>10_08_0003 -
13992276-13992311,13992461-13992598,13992682-13992852,
13992926-13992989,13993404-13993552,13993700-13993753,
13993894-13994034,13994134-13994412,13994518-13994743,
13995328-13995734
Length = 554
Score = 28.3 bits (60), Expect = 8.7
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Frame = +3
Query: 396 ECGFEMDEESAAVIDHFNYDVTDE----GDHT-RIVVSPKNLIK----APTIVGEQNTQP 548
E G +MD+ A V+D F+ D GD T R+ ++P L++ A TI G + T+P
Sbjct: 357 EVGVKMDKHGAIVVDEFSRTSVDSIWAVGDVTNRVNLTPVALMEGGALARTIFGNEPTKP 416
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,160,576
Number of Sequences: 37544
Number of extensions: 444664
Number of successful extensions: 1275
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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