Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_C13
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   2.1  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   6.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   8.6  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 316 VMASLSTCPPNSSTEGANTMRFLYKYSPYFDRTRFASSASLKVK 185
           VM++ STC  +    G+ +   +YK +    + R  SSA  + K
Sbjct: 573 VMSASSTCKKDKKNAGSGSRFTIYKANKASKKKREKSSAKKERK 616


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 753 FFSDEAFNSPVTKVHGDKTKSDVSGNKILAIRLTEW 860
           F SDE   +  + V+  +T++ V+   I A+R  +W
Sbjct: 28  FVSDEMIATAASVVNACQTQTGVATVDIEAVRNGQW 63


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 765 HQRRRITIH*KQYEHCFLLAELQSVLSYG 679
           H++R  TIH     +  L  E+Q V S G
Sbjct: 193 HRQRHSTIHLSTGNYSRLACEIQFVRSMG 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,920
Number of Sequences: 438
Number of extensions: 4587
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)