Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_C12
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    31   0.24 
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    30   0.42 
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    27   3.9  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   6.9  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   9.1  
SPBC21C3.04c |||mitochondrial ribosomal protein subunit L34|Schi...    25   9.1  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    25   9.1  

>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 15/47 (31%), Positives = 30/47 (63%)
 Frame = +1

Query: 301 IKVKQEESSTQTQEIKNAPRKAKLRQDVKVLKQKLKSREIVIVNIKS 441
           IK ++EE   Q  EI+   R+++L+++ +  K+  K  E++I N+K+
Sbjct: 358 IKAQEEERKRQA-EIEKEIRQSRLQEEERKKKKLAKYTEVIISNLKA 403


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 15/64 (23%), Positives = 33/64 (51%)
 Frame = +1

Query: 280 NFWKMSYIKVKQEESSTQTQEIKNAPRKAKLRQDVKVLKQKLKSREIVIVNIKSILDLLK 459
           + W M Y+   +    T+    +NA R+++L+ +++  +++LK     + N K I  + K
Sbjct: 211 DIWNMKYLPKFKWHHLTEQIAAENAARESRLKVEIEQGRKQLKQYMRNVENAKMIEGIRK 270

Query: 460 KNGD 471
           K  +
Sbjct: 271 KRSE 274


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = -2

Query: 705 IFCSLISQILFLFICVFYVSL 643
           +FC+++ + + L+IC+F+  L
Sbjct: 153 VFCNILGRKIVLYICIFFFML 173


>SPCC18.03 |||shuttle craft like transcriptional
            regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +2

Query: 272  DVGISGKCPI*RSNKRNQVLKRKK*KMPREKQNY 373
            D GI+ +C I   N +N+++K +  ++  +K+ +
Sbjct: 1022 DAGIASRCEICEINDKNEIVKTRSQRIHSKKKAF 1055


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 294 HFPEIPTSYLLEDPPR 247
           HF  I TSYL E PP+
Sbjct: 785 HFQAIITSYLCESPPK 800


>SPBC21C3.04c |||mitochondrial ribosomal protein subunit
           L34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 148 RGFSLKTTYNTSVRHDYTETFTIFGKKQ 65
           RGF  +  +NT+  +    T  IFG+ Q
Sbjct: 31  RGFPTRNPFNTATLYSSLPTMNIFGQMQ 58


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 121 NTSVRHDYTETFTIFGKKQATSCISALLTS 32
           N   R DY   F I G+KQ T C +  L S
Sbjct: 243 NEIYRDDYISFFEIDGRKQRTWCRNICLLS 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,539
Number of Sequences: 5004
Number of extensions: 61652
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)