Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_C12
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0143 + 17670103-17670430,17670511-17670785,17670897-176713...    29   5.4  
03_01_0599 + 4416441-4416549,4416854-4417394,4417476-4417939,441...    28   7.2  

>03_04_0143 +
           17670103-17670430,17670511-17670785,17670897-17671376,
           17671454-17671849,17673215-17673289,17673939-17673960,
           17674041-17674129,17675204-17675495,17676019-17676087,
           17676394-17676572
          Length = 734

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 481 SIKNRHFSLINLKSTLYLQSLFRDF*VFVSKP*HLVVILLFSGHFLFLAF 332
           +IK + + L+  K  L L SL  DF     +P  +VV    S H L++ F
Sbjct: 551 NIKEKVWKLLGEKEELELSSLSHDFRRLNLEPKEIVVATFSSSHNLWICF 600


>03_01_0599 +
           4416441-4416549,4416854-4417394,4417476-4417939,
           4418361-4418496,4418616-4418687,4418777-4418845,
           4418940-4419011,4419101-4419172,4419359-4419416
          Length = 530

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 160 NILPYIRFIDKFLLVVARKHVYHLPDVKRTR 252
           NILP +  +  F    ARK+ Y LP VK +R
Sbjct: 74  NILPLLATVRYFPDATARKYCYQLPVVKGSR 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,753,271
Number of Sequences: 37544
Number of extensions: 311941
Number of successful extensions: 625
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)