Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_C11
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 27 3.1
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 26 7.1
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 26 7.1
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 26 7.1
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 26 7.1
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 26 7.1
SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo... 25 9.4
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family... 25 9.4
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 25 9.4
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 25 9.4
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 301 KLKAATSDD-LNMLISLLESPILRSITTLHDSVGMLATQVAHH 426
KL A S+D L+S+ PIL + + H+SV +A+H
Sbjct: 15 KLALAESEDSFQSLVSVFLCPILLKLDSPHESVRNKTISIANH 57
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 220 MHLGVNVSNALQQLESV--KAAVDQSNDPKLKAATSDDLNMLISLLES 357
+H N+ L + E++ ++ ++ +DP L D++ +SLLES
Sbjct: 277 LHPAKNLVELLTEKENLINESTLESPSDPPLPPTKMKDIDYFVSLLES 324
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 520 EQRVPQVSPPHSMEFGSDNEHILGLDSGSVDSNMSPKQ 633
+QR+P +SPP + + + + L L + ++SP Q
Sbjct: 413 KQRIPSLSPPITRSYNAKHRPSLVLGTSVNPHSLSPSQ 450
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 481 QTRNLYGNQEGEEEQRVPQVSPPHSM-EFGSDNEHILGLDSGSVDSNMSPKQSRGLLDLS 657
Q +LY + P + P+S+ + ++ H++ ++S + D N++ + S L +
Sbjct: 416 QVHSLYLSNNNPYMVLQPDIQSPYSLIAYHANGLHVVDIESWARDLNLNFENSEFLNNEE 475
Query: 658 RNDD 669
ND+
Sbjct: 476 ENDE 479
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 668 SSLRDKSNKPRLCLGDMLESTEPLSSPRICSL 573
SS RD N R LGD+LES+ + R+ ++
Sbjct: 432 SSSRDSFNSYRRDLGDLLESSYSIFGERLYAM 463
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2
Query: 623 DMLESTEPLSSPRICSL 573
D+L S EP+S P +CSL
Sbjct: 12 DILNSEEPISLPGLCSL 28
>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 238 VSNALQQLESVKAAVDQSNDPKLKAATSDDLNMLISLLESPILRSITTLHD 390
+SN L +AA D N PK+K A L ++S+L + S+ ++ D
Sbjct: 77 ISNVLLLSCKPQAAEDVLNSPKMKEALKGKL--ILSILAGKTISSLQSMLD 125
>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 9.4
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Frame = +1
Query: 556 MEFGSDNEHILGLD----SGSVDSNMS-----PKQSRGLLDLSRNDDSLASTNHNVVAGD 708
+E SD+EHI+GL+ GS D+ S K+S + L N ++ +NHN V
Sbjct: 107 LEGSSDSEHIIGLEKPKPEGSTDAATSMDVDLHKKSEEVNWLFENTRTV--SNHNSVLHG 164
Query: 709 WAQVEIINLVND 744
++ I+L D
Sbjct: 165 IKPIDFISLRKD 176
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.4 bits (53), Expect = 9.4
Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 1/127 (0%)
Frame = +1
Query: 394 VGMLATQVAHHPS-ILPGDFDITPAGDLALQTRNLYGNQEGEEEQRVPQVSPPHSMEFGS 570
V ++T V + P+ +L ++TP D RN+Y Q G++ P ++ + +
Sbjct: 720 VPKVSTHVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGT----ALRYRT 775
Query: 571 DNEHILGLDSGSVDSNMSPKQSRGLLDLSRNDDSLASTNHNVVAGDWAQVEIINLVNDGT 750
DN+ + L +G + LD N + + D I+N
Sbjct: 776 DNK-LYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAMILNKSAHER 834
Query: 751 GLGFGII 771
G G+G +
Sbjct: 835 GFGYGTV 841
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -3
Query: 403 ACPQSHEV**YFVIWDSLINL--LACSNHHWLQL*AWDHC 290
ACP S +V YF I LIN ++HH W HC
Sbjct: 41 ACPSSSKVLKYFRITGCLINFGKQPANDHH-----LWGHC 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,252,717
Number of Sequences: 5004
Number of extensions: 68473
Number of successful extensions: 193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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