Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_C11
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0072 + 609254-609722,610355-610421,610652-610745,610984-61... 32 0.45
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970... 32 0.45
11_01_0071 + 565349-565814,566626-566692,567255-567288,567747-56... 30 2.4
03_04_0151 - 17729023-17729372,17729441-17730623,17730723-177309... 30 2.4
11_06_0173 + 20891526-20891957 29 3.2
09_02_0564 + 10698710-10699294 29 4.2
07_03_1036 - 23430643-23431311,23431441-23431668 29 5.6
03_02_0569 - 9528027-9529256,9530019-9530260,9530374-9531161,953... 29 5.6
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 29 5.6
>12_01_0072 +
609254-609722,610355-610421,610652-610745,610984-611127
Length = 257
Score = 32.3 bits (70), Expect = 0.45
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 773 PIIPNPRPVPSFTRFIISTCAQSPATT 693
PI PRP+PS T STC+ SP+ T
Sbjct: 47 PITARPRPLPSDTTAAASTCSASPSHT 73
>03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,
9700145-9700235,9700698-9700759,9701256-9702962,
9703789-9703870,9703972-9704057,9704855-9704968,
9705113-9705163,9705261-9705358,9707084-9707546
Length = 1367
Score = 32.3 bits (70), Expect = 0.45
Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 4/131 (3%)
Frame = +1
Query: 289 SNDPKLKAATSDDLNMLISLLESPILRSITTLHDSVGMLATQVAHHPSILPGDFDITPAG 468
S++ K++ L I LES + + S+G L++ + D+ G
Sbjct: 1108 SDEVKIRNKAERRLRRAIKKLESLKILDVELSDSSIGSLSSNSCSGHRAPETEADVNNPG 1167
Query: 469 DLALQTRNLYGNQEGE----EEQRVPQVSPPHSMEFGSDNEHILGLDSGSVDSNMSPKQS 636
A + +QEG ++ P V E G D E SG + +++
Sbjct: 1168 SSAGSCTQVNSSQEGSWCSVVSEQSPSVHCKEEEENGLDPEDAKNCGSGEEAGDHDSERT 1227
Query: 637 RGLLDLSRNDD 669
G L SR+D+
Sbjct: 1228 HGTLPCSRDDE 1238
>11_01_0071 +
565349-565814,566626-566692,567255-567288,567747-567860
Length = 226
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 773 PIIPNPRPVPSFTRFIISTCAQSPATT 693
P PRP+PS T STC+ SP+ T
Sbjct: 47 PTTGRPRPLPSDTTAAASTCSASPSHT 73
>03_04_0151 -
17729023-17729372,17729441-17730623,17730723-17730953,
17730975-17731036,17732085-17732157,17737044-17737834,
17737932-17738004
Length = 920
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 349 LESP-ILRSITTLHDSVGMLATQVAHHP-SILPGDFDITPAGDLALQTRNLYGNQEGEE 519
L SP I RS+TT S + V HP S+L F +T + ++ T+ +G +G++
Sbjct: 773 LSSPAISRSLTTTSSSSPKRRSNVTSHPSSVLRCVFFLTTSTSISFATKITFGQLQGQQ 831
>11_06_0173 + 20891526-20891957
Length = 143
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 292 CSGPQQLSHFPIAVMHLRRSRPNAS*KIYFQKTKSN 185
CS P L+H V HLR +PN ++ ++T +N
Sbjct: 89 CSRPYPLAHLDRHVQHLRGGQPNLGLRVKRRETLTN 124
>09_02_0564 + 10698710-10699294
Length = 194
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 511 GEEEQRVPQVSPPHSMEFGSDNEHILGLDSGSVDSN 618
G+EE RV V + GSDN + G+ G DS+
Sbjct: 126 GDEEDRVVVVGEERGEKLGSDNGCVEGIREGIADSD 161
>07_03_1036 - 23430643-23431311,23431441-23431668
Length = 298
Score = 28.7 bits (61), Expect = 5.6
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = -2
Query: 791 TPLVXAPIIPNPRPVPSFTRFIISTCAQSPATTL*LVDAKESS-----LRDKSNKPRLCL 627
T L+ AP P PVPS+ S+ SP+ +D +S LR N P L +
Sbjct: 98 TQLLSAPSSSFPSPVPSYHASPASSSFPSPSR----IDNPSASCLLPFLRGLPNLPPLRV 153
Query: 626 GDMLESTEPLSSP 588
T PLSSP
Sbjct: 154 SSSAPVTPPLSSP 166
>03_02_0569 -
9528027-9529256,9530019-9530260,9530374-9531161,
9531613-9531953,9532090-9532310,9532392-9532702,
9532779-9533038,9533691-9533891,9533992-9534167,
9534242-9534296,9535739-9536146
Length = 1410
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 427 PSILPGDFDITPAGDLALQTRNLYGNQEGEEEQRVPQVSPPHS 555
P P + PAGD + R G GEEE +V PP S
Sbjct: 25 PPESPSPYGDGPAGDAGVGAREGEGLGPGEEEVEDDEVEPPPS 67
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 496 YGNQEGEE--EQRVPQVSPPHSMEFGSDNEHILGLDSGSVDSN 618
YG Q+G E E RVPQ P E G ++EH + G D N
Sbjct: 73 YGGQKGFEVRESRVPQ--PDGESEGGEEDEHDGESEGGEEDKN 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,712,321
Number of Sequences: 37544
Number of extensions: 429345
Number of successful extensions: 1158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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