Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_C11
(792 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 25 1.1
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 25 1.1
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 23 3.3
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 23 4.3
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 23 4.3
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 23 4.3
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 22 7.5
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 22 7.5
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 22 7.5
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 9.9
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 21 9.9
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 24.6 bits (51), Expect = 1.1
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -2
Query: 671 ESSLRDKSNKP-RLCLGDMLESTEPLSSPRICSLSDPNSILCGGETCGTLC 522
E S + K N P + + D + + +S IC LS N+ + GG LC
Sbjct: 195 EGSQKRKFNVPLQPVVSDPIFDKKAMSDLVICKLSHSNASVAGGMEMILLC 245
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 24.6 bits (51), Expect = 1.1
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -2
Query: 671 ESSLRDKSNKP-RLCLGDMLESTEPLSSPRICSLSDPNSILCGGETCGTLC 522
E S + K N P + + D + + +S IC LS N+ + GG LC
Sbjct: 195 EGSQKRKFNVPLQPVVSDPIFDKKAMSDLVICKLSHSNASVAGGMEMILLC 245
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 23.0 bits (47), Expect = 3.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -1
Query: 633 LFRRHVRVNRATIKSKNMFIIRSKLHTMW 547
L RRH +N T + + ++ L T+W
Sbjct: 238 LLRRHYSMNSTTYVTLTIVLMTMTLMTLW 266
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 22.6 bits (46), Expect = 4.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 228 GRERLKCITAIGKCES 275
GR+R +CI +GK E+
Sbjct: 65 GRDRYECIEKVGKKEA 80
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 22.6 bits (46), Expect = 4.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 228 GRERLKCITAIGKCES 275
GR+R +CI +GK E+
Sbjct: 65 GRDRYECIEKVGKKEA 80
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 22.6 bits (46), Expect = 4.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 228 GRERLKCITAIGKCES 275
GR+R +CI +GK E+
Sbjct: 65 GRDRYECIEKVGKKEA 80
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 21.8 bits (44), Expect = 7.5
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = -2
Query: 767 IPNPRPVPSFTRFIISTCAQSPATTL*LVDAKESSLRDKSNKPR 636
IP P P+ + +S A SP KES R + PR
Sbjct: 373 IPEPSKNPAMGHWQMSCVACSPPPRQTPPSRKESGRRRRRRTPR 416
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.8 bits (44), Expect = 7.5
Identities = 8/23 (34%), Positives = 10/23 (43%)
Frame = -1
Query: 771 YNTKSKASSIIYKIYNFNLCPVP 703
YN + + Y I N PVP
Sbjct: 314 YNNNYNSKKLYYNIINIEQIPVP 336
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 7.5
Identities = 8/23 (34%), Positives = 10/23 (43%)
Frame = -1
Query: 771 YNTKSKASSIIYKIYNFNLCPVP 703
YN + + Y I N PVP
Sbjct: 325 YNNNYNSKKLYYNIINIEQIPVP 347
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 9.9
Identities = 8/25 (32%), Positives = 11/25 (44%)
Frame = -1
Query: 777 STYNTKSKASSIIYKIYNFNLCPVP 703
+ YN + + Y I N PVP
Sbjct: 101 NNYNNNNYNKKLYYNIINIEQIPVP 125
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 9.9
Identities = 8/25 (32%), Positives = 11/25 (44%)
Frame = -1
Query: 777 STYNTKSKASSIIYKIYNFNLCPVP 703
+ YN + + Y I N PVP
Sbjct: 101 NNYNNNNYNKKLYYNIINIEQIPVP 125
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,128
Number of Sequences: 438
Number of extensions: 4939
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -