Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_C09
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   100   3e-22
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   9.4  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  100 bits (239), Expect = 3e-22
 Identities = 58/149 (38%), Positives = 71/149 (47%), Gaps = 2/149 (1%)
 Frame = +3

Query: 105 RAELGNPGS--LIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 278
           R EL  PGS  L G  Q+YN  ++AH                  N LVPL++GAPD+A+P
Sbjct: 43  RMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYP 102

Query: 279 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 458
           R+NN  F              + E G G G TVYPPLSS  +H G ++DLAI SL L GI
Sbjct: 103 RVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGI 162

Query: 459 SSXXXXXXXXXXXXXXXXXXXSFDQLPLF 545
           SS                   S  Q+PLF
Sbjct: 163 SSTLGSVNLIATMINMRAPGLSLYQMPLF 191



 Score = 99.5 bits (237), Expect = 5e-22
 Identities = 43/72 (59%), Positives = 53/72 (73%)
 Frame = +1

Query: 553 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYIL 732
           A+ IT+          AG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPEVYIL
Sbjct: 194 AIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYIL 253

Query: 733 ILPGFGIISHXI 768
           I+P FG++SH I
Sbjct: 254 IMPAFGVVSHII 265


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 302 TPTPLPYIINFKKNCRKWCRNRMNS 376
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,315
Number of Sequences: 5004
Number of extensions: 40063
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)