Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_C08
         (843 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    23   2.3  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    22   5.3  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   9.2  

>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 164 KWRIRGCAKGRCDPLQIGQQISSWISE 244
           K R++       D LQ+GQ  S W +E
Sbjct: 119 KERLKTQGISHLDKLQLGQYFSPWFAE 145


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 78  ACTQCLPVNKDQXQXVLTWI 137
           +C QC P    Q Q VL ++
Sbjct: 76  SCPQCTPQEMKQIQKVLAFV 95


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +3

Query: 621 IFSTLISVFVNGRIWLNDFFTFKIILPITLCQRSCDRFYLIYFKYXSTAFVTLIFVSTL* 800
           +F     +F    ++L   + F   L I LC     R ++I+  +   AF      ST  
Sbjct: 267 LFCCAFIIFTMHLLFLLCIYYFYCALIILLCIYYFCRAFIIFPTHFYCAFSLYPLKSTFY 326

Query: 801 LNV 809
           LNV
Sbjct: 327 LNV 329


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,502
Number of Sequences: 336
Number of extensions: 4981
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23244256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)