Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_C08
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 75 1e-14
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 64 2e-11
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 38 0.002
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 27 4.4
SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.8
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 26 7.7
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 26 7.7
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 26 7.7
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 74.9 bits (176), Expect = 1e-14
Identities = 53/140 (37%), Positives = 74/140 (52%), Gaps = 4/140 (2%)
Frame = +3
Query: 132 WISDVLGEPLPNGAYE--DVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMENIQRF-Q 302
WI + L L N + D L+ GVILC++ K A G+ + +E F MENI F
Sbjct: 12 WIEETLHTKL-NAQLDLLDQLQSGVILCRIC-KEALGANIRYKESNMPFVQMENISAFIN 69
Query: 303 AAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQKHPEFTGPQLGPKMADKNER 482
A + VP +++FQT+DLFERRN QV +++ R K LGPK+A+K R
Sbjct: 70 YAQQVVHVPSQDMFQTSDLFERRNDEQVLRSIHSFSRYAAKMFPGKVRGLGPKLAEKKPR 129
Query: 483 TFTEEQLRAHNAELN-LQMG 539
F+ +Q R +N LQ G
Sbjct: 130 VFSAQQQREFREGVNSLQYG 149
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 64.5 bits (150), Expect = 2e-11
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Frame = +3
Query: 132 WISDVLGEPL-PNGAYEDVLRDGVILCKLANKLAPGSVKKI-QERGTNFQLMENIQRFQA 305
WI + LG L P +E LR+GV+L L K P + KI F+ +NI +F
Sbjct: 50 WIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLD 109
Query: 306 AIKKYGVPEEEIFQTADLFERRNIPQVTLCLYAL 407
I G+PE F+ D++E +N+P+V C++AL
Sbjct: 110 FIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHAL 143
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 37.5 bits (83), Expect = 0.002
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Frame = +3
Query: 132 WISDVLGEPLPN-GAYEDVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMEN----IQR 296
W+ + N + D L +G +LC+LA K P + R +Q+ E +
Sbjct: 73 WLEEETNNEYQNLDDFVDALVNGKVLCQLAFKYYPKLASNWKPR---YQISERNTVYLNA 129
Query: 297 FQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYAL 407
F + G+ F+T DL R NIP+V CL+AL
Sbjct: 130 FFHFLDFIGMFTPFRFETKDLVRRFNIPKVIYCLHAL 166
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 283 SMSWKLVPLSWIFFTDPGANLLANLQRITPSLSTSSYAPFG 161
S+++KL + DP LAN +++ SLS +Y P G
Sbjct: 33 SLAYKLYSMLRSLKLDPHFMELANPKKVDSSLSYENYQPIG 73
>SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 163
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 200 DPLQIGQQISSWISEKNPRERNQLPAHG 283
D LQ+ ++ SWI+EK E +L + G
Sbjct: 11 DSLQVDEKAKSWIAEKVEEELRRLESVG 38
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 652 FTNTDINVENIGKNLEAIY 596
F N VEN+GK++EA+Y
Sbjct: 1855 FDNYSEKVENLGKSIEALY 1873
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 220 LANLQRITPSLSTSSYAPFGSGSPKTSEIQ 131
L+N +TPS S S Y P +T +Q
Sbjct: 689 LSNFNSVTPSSSASLYPPLIPSEARTPSVQ 718
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +3
Query: 423 KHPEFTGPQLGPKMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGF 578
+ F G G + + + R R N G++ G S SG+GGF
Sbjct: 565 RESSFGGNGRGGRYSGRGGRGGNAYGARDFRRPTNSSSGYSSGPSYSGYGGF 616
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 532 KWASIRAPPSPVMVASVTPATCKLLLNFSQYF 627
++ IR+PP+ V + S+TP NF Q +
Sbjct: 46 RYTKIRSPPTRVSIESITPKQRFPAPNFEQAY 77
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,650,268
Number of Sequences: 5004
Number of extensions: 82988
Number of successful extensions: 243
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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