Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_C08
(843 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 1e-20
SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.) 93 3e-19
SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05) 76 3e-14
SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10) 73 4e-13
SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 8e-11
SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8) 48 1e-05
SB_36121| Best HMM Match : CH (HMM E-Value=0.0017) 47 2e-05
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 5e-05
SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 8e-04
SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.054
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09) 35 0.072
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 35 0.095
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084) 31 1.5
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22) 30 2.0
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 30 2.0
SB_15403| Best HMM Match : CH (HMM E-Value=0) 30 2.0
SB_17915| Best HMM Match : 7tm_1 (HMM E-Value=6e-30) 29 3.6
SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12) 29 4.7
SB_33054| Best HMM Match : DEAD (HMM E-Value=0.42) 28 8.2
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 97.5 bits (232), Expect = 1e-20
Identities = 64/163 (39%), Positives = 90/163 (55%), Gaps = 8/163 (4%)
Frame = +3
Query: 132 WISDVLGEPL--PNGAYEDV---LRDGVILCKLANKLAPGSVKKIQERGTNFQLMENIQR 296
WI VLGE + NG + V L+DG +LC+LAN+L G KI ++ F+ MENI
Sbjct: 439 WIDTVLGESIFGENGGVDTVHQTLKDGQVLCRLANRL--GGDLKINQQKMPFKQMENIGN 496
Query: 297 FQAAIKK-YGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQKHPEFTGPQLGPKMADK 473
F + I+ GV + ++FQT DL+E+ N+ V C++A+GR + PQLGPK + K
Sbjct: 497 FLSFIENNLGVAKNDLFQTVDLYEKSNMWNVICCIHAVGRRAYSLGKDV-PQLGPKESTK 555
Query: 474 NERTFTEEQLRAHNAELN-LQMG-FNKGASQSGHGGFGNTRHM 596
N R FTE QL +N QMG K + + FG R +
Sbjct: 556 NPRQFTERQLNEGKTIINSFQMGPAAKNVATASGQSFGRQRQI 598
>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 93.1 bits (221), Expect = 3e-19
Identities = 56/141 (39%), Positives = 79/141 (56%), Gaps = 5/141 (3%)
Frame = +3
Query: 102 NKDQXQXVLTWISDVLGEPLPNGA-----YEDVLRDGVILCKLANKLAPGSVKKIQERGT 266
+ D WI +LGE + G +VL+DG +LC++ANKL G++K I
Sbjct: 65 DSDLAAQATAWIEGILGERVFGGKTGADDVHEVLKDGQVLCRVANKLG-GNIK-INSSKM 122
Query: 267 NFQLMENIQRFQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQKHPEFTGP 446
F++MEN +F GVP+ ++FQT DL+E++N+P V ++ALGR + T
Sbjct: 123 AFKMMENTGKFLEFCDTIGVPKTDMFQTVDLYEKQNMPGVINGIHALGRKAHSTGK-TCL 181
Query: 447 QLGPKMADKNERTFTEEQLRA 509
LGPK A N R FTEEQ RA
Sbjct: 182 ALGPKEASANPREFTEEQRRA 202
>SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05)
Length = 195
Score = 76.2 bits (179), Expect = 3e-14
Identities = 56/138 (40%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Frame = +3
Query: 111 QXQXVLTWISDVLGEPLPNGA-----YEDVLRDGVILCKLANKLAPGSVKKIQERGTNFQ 275
Q + WI VLGE + GA + VL+DG IL +LA KL G+ K+ E+ F+
Sbjct: 26 QEEEARIWIEAVLGEKVFGGAEGPDDVQKVLKDGKILARLAIKL--GAKIKVNEQNMPFK 83
Query: 276 LMENIQRFQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQKHPEFTGPQLG 455
MENI F + GV + FQTADL++ N +T C Q + P LG
Sbjct: 84 QMENIGNFLSHCGHLGVASGDQFQTADLYDNAN---MTSC--------QLIKDLDIPTLG 132
Query: 456 PKMADKNERTFTEEQLRA 509
PK A+ N R FTEEQLRA
Sbjct: 133 PKEAEANVREFTEEQLRA 150
>SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)
Length = 172
Score = 72.5 bits (170), Expect = 4e-13
Identities = 32/72 (44%), Positives = 48/72 (66%)
Frame = +3
Query: 174 YEDVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMENIQRFQAAIKKYGVPEEEIFQTA 353
+++ L+ GV+LCKLAN + PG++KKI NF +MENI+ F ++ GV + F T
Sbjct: 90 FQNTLKSGVVLCKLANAIQPGAIKKINNAKMNFMMMENIENFCNFVQTKGVASQYQFVTI 149
Query: 354 DLFERRNIPQVT 389
DLFE +N+ QV+
Sbjct: 150 DLFEGKNMHQVS 161
>SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 64.9 bits (151), Expect = 8e-11
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Frame = +3
Query: 162 PNGAYEDVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMENIQRFQAAIKK-YGVPEEE 338
P + + LR GVILCK+ANK+ ++ KI E +F + ENI +F ++ G+
Sbjct: 301 PGETFAEPLRSGVILCKIANKIKSNAIPKIGESNKSFVMQENISKFLDFCERVLGLDRLN 360
Query: 339 IFQTADLFERRNIPQV 386
+FQT DLFER+N+ V
Sbjct: 361 LFQTVDLFERQNVGMV 376
Score = 36.7 bits (81), Expect = 0.024
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Frame = +3
Query: 219 NKLAPGSVKKIQE----RGTNFQLMENIQRFQAAI--KKYGVPEEEIFQTADLFERRNIP 380
N++ PG++ KI R FQ++ENI++F A + + ++F DL+E+ N+
Sbjct: 205 NEVFPGAISKIHGINGGRFHGFQILENIEKFLKACQGEPFNCNVVDLFSPGDLYEKNNVG 264
Query: 381 QV 386
QV
Sbjct: 265 QV 266
>SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 52.8 bits (121), Expect = 3e-07
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Frame = +3
Query: 216 ANKLAPGSVKK--IQERGTNFQLMENIQRFQAAIKKYGVPEEEIFQTADLFERRNI 377
AN + PG +KK + F++MENI F IK YGV EE IF T DL+E+RN+
Sbjct: 188 ANAIQPGVIKKPHLNPGKMGFKMMENIGWFVNFIKSYGVQEEYIFVTVDLYEKRNV 243
>SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8)
Length = 89
Score = 47.6 bits (108), Expect = 1e-05
Identities = 30/77 (38%), Positives = 42/77 (54%)
Frame = +3
Query: 279 MENIQRFQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQKHPEFTGPQLGP 458
MENI F + GV + ++FQT DL+E++N+ A G PQLGP
Sbjct: 18 MENIGNFLLFCESLGVSKVDLFQTVDLYEKQNMAAAR----AKG--------LNCPQLGP 65
Query: 459 KMADKNERTFTEEQLRA 509
K A+ N R+F E++LRA
Sbjct: 66 KEAEANPRSFDEDKLRA 82
>SB_36121| Best HMM Match : CH (HMM E-Value=0.0017)
Length = 209
Score = 47.2 bits (107), Expect = 2e-05
Identities = 25/78 (32%), Positives = 41/78 (52%)
Frame = +3
Query: 132 WISDVLGEPLPNGAYEDVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMENIQRFQAAI 311
WI P N + + L DGV+LC+L +A SV +I ++GT +N+ F A
Sbjct: 36 WIERATFTPFKNDDFRESLADGVLLCELIVNVANISVGRINKQGTAHAGRDNLSVFFRAC 95
Query: 312 KKYGVPEEEIFQTADLFE 365
+ G+ + ++F+ DL E
Sbjct: 96 EALGLDKYQLFEHEDLDE 113
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 38.3 bits (85), Expect(2) = 5e-05
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 258 RGTNFQLMENIQRFQAAIKK--YGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQKH 428
+ T+ + ENI F A ++ + +++FQT LFER+N+ QV + A R +KH
Sbjct: 891 KSTSLGMQENIANFLNACQEEPFNCNPQDLFQTVYLFERQNLGQVISGIQAFARKVRKH 949
Score = 26.6 bits (56), Expect(2) = 5e-05
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 438 TGPQLGPKMADKNERTFTEE 497
T P GPK A+KN R F E+
Sbjct: 984 TVPLFGPKEAEKNPRNFPEQ 1003
>SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 44.0 bits (99), Expect = 2e-04
Identities = 31/125 (24%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Frame = +3
Query: 186 LRDGVILCKLANKLAPGSVKKI--QERGTNFQLMENIQRF-QAAIKKYGVPEEEIFQTAD 356
LRDGV+LC++AN L PG+V + + + + F ++NI+ F A + + + + ++F +
Sbjct: 55 LRDGVLLCQVANVLHPGAVVDVGMKPQMSQFMCLKNIRNFLTACTRLFNLADGDLFDANE 114
Query: 357 LFERRNIPQVTLCLYALGRITQKHPEFTGPQLGPKMADKNE-RTFTEEQLRAHNAELNLQ 533
L++ + +V L L + PE P + N+ + +E + ++ E+ L
Sbjct: 115 LYDVSDFGKVVNTLSKLSHL----PESLHRGFEPFPPNTNKFAAYQDEDIYSNLEEIALS 170
Query: 534 MGFNK 548
G +
Sbjct: 171 SGITQ 175
>SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 41.5 bits (93), Expect = 8e-04
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = +3
Query: 186 LRDGVILCKLANKLAPGSVKKIQ------ERGTNFQLMENIQRFQAAIKKYGVPEEEIFQ 347
L DGV+LC L N G++ I + T + M+N+ F A KK GV E +
Sbjct: 336 LADGVVLCHLVNSAYKGTIPSIHIPSAGVPKLTMTKCMKNVDYFLEACKKLGVDRELLCS 395
Query: 348 TADLFERRNIPQVTLCLYAL 407
+AD+ + ++ +V + AL
Sbjct: 396 SADILQEKSPQRVCATVQAL 415
>SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 37
Score = 35.5 bits (78), Expect = 0.054
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +3
Query: 444 PQLGPKMADKNERTFTEEQLRA 509
P LGPK A+ N R FTEEQLRA
Sbjct: 10 PTLGPKEAEANVREFTEEQLRA 31
>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
Length = 959
Score = 35.1 bits (77), Expect = 0.072
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 23/122 (18%)
Frame = +3
Query: 117 QXVLTWISDVLGEP-LPNGAYEDVLRDGVILCKLAN-------------------KLAPG 236
+ + +WIS +LGE L + +L GV+LC+LAN L P
Sbjct: 30 EDLASWISRLLGEEELNTDTFTSMLDTGVVLCRLANFIQTVGEEFFVRNPKFPRRGLFPA 89
Query: 237 SVKKIQERGT---NFQLMENIQRFQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYAL 407
++RG +F +N+ F ++ VP+ +F+T DL +N V L L +
Sbjct: 90 CGVTYKQRGATHGSFVARDNVSNFIRWCRELRVPDVIMFETEDLVLNKNEKTVLLTLLEV 149
Query: 408 GR 413
R
Sbjct: 150 AR 151
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 34.7 bits (76), Expect = 0.095
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 279 MENIQRFQAAIKKYGVPEEEIFQTADLFERRNIPQV 386
M I +F +GV + ++FQT DL+E++NI QV
Sbjct: 700 MVTIAKFLDFCGTFGVAKSDLFQTVDLYEKQNIQQV 735
>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
Length = 2086
Score = 30.7 bits (66), Expect = 1.5
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 24/113 (21%)
Frame = +3
Query: 186 LRDGVILCKLANKL--------------APGSVKKIQE--RGTN----FQLMENIQRFQA 305
L DG +LCKLAN + PG K +E RG F EN+Q+F
Sbjct: 697 LEDGTLLCKLANYIQEMADTYGQKHNTHVPGKKIKFKESKRGHRESKLFHSRENVQKFLT 756
Query: 306 AIKKYGVPEEEIFQTADLFE----RRNIPQVTLCLYALGRITQKHPEFTGPQL 452
+ + +PE +F++ D+ R ++ +CL + R K+ P+L
Sbjct: 757 WCRWHDIPEAILFESNDVVLVDECRTGGREIVICLMEIARRVIKYEIKQVPKL 809
>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
Length = 820
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 189 RDGVILCKLANKLAPGSV--KKIQERGTNFQLMENIQRFQAAIKKYGVP 329
RDG+ +C+L N L PG + K +E+ TN + I Q A +G+P
Sbjct: 454 RDGMAICELVNALQPGLIPDSKYKEK-TNSEATAKI-GIQTAHDAFGIP 500
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -3
Query: 271 KLVPLSWIFFTDPGANLLANLQRITPSLSTSSYAPFGSGSPKTSEIQVRTXCXWSLFTG 95
K+VP SW ++ L PS++ + P G GS + + +R W+ F G
Sbjct: 6989 KIVPKSW----HSHMSMRVELYGCYPSMTRLCFKPLGVGSRRLPDANLRASSSWNRFHG 7043
>SB_15403| Best HMM Match : CH (HMM E-Value=0)
Length = 1907
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3
Query: 174 YEDVLRDGVILCKLANKLAPGSV 242
YE V +DG++LCK+ N APG++
Sbjct: 80 YEKV-KDGILLCKMINLSAPGTI 101
>SB_17915| Best HMM Match : 7tm_1 (HMM E-Value=6e-30)
Length = 387
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +3
Query: 621 IFSTLISVFVNGRIWLNDFFTFKIILPITLCQRSCDRFYLIYFKYXSTAFVTLIFVS 791
I S ++ F++ I L K +L QRSCD F ++ + + + + T+ F++
Sbjct: 61 ILSLSLADFLDSGIALQMVVFIKYLLRFPWTQRSCDSFIVLLYTFRTASASTVTFMA 117
>SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)
Length = 906
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 132 WISDVLGEPLPNGAYEDVLRDGVILCKLANKLAPGSVKKIQ 254
W+S VL + + D L +GV+LCKLA + + + I+
Sbjct: 44 WLSRVLEVEVQADNFMDYLDNGVLLCKLAQLIQKAATEWIK 84
>SB_33054| Best HMM Match : DEAD (HMM E-Value=0.42)
Length = 1088
Score = 28.3 bits (60), Expect = 8.2
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Frame = +3
Query: 150 GEPLPNGAYEDVLRDGVILCKLANKLAPGSVKK---IQERGTNFQLMENIQRFQAAIKKY 320
GEP P+ + RDG + C L +L SV I ++ T + + ++ F +
Sbjct: 328 GEPGPHARACGIQRDGQLCCHLRGRLPEESVHSAFFIDDKETT-KRAKVLETFDEKLAPT 386
Query: 321 GVPEEEIFQTADLFERRNIPQVTL-CLYALGRITQKHPEF 437
G +E++F+ E + + L C+ ++ R Q F
Sbjct: 387 GCTKEDLFRLERKLEIKLVAVDALACMGSIPRPKQSCKNF 426
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/95 (18%), Positives = 41/95 (43%)
Frame = +3
Query: 117 QXVLTWISDVLGEPLPNGAYEDVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMENIQR 296
Q +L W+ + E +P + DG + L + +APG + + ++ L Q
Sbjct: 497 QALLAWVKSKMPESVPMDNFTTHWNDGRAIACLVDAVAPGLLPECEDLDPKDALQNAQQA 556
Query: 297 FQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLY 401
+ A +P ++ AD+ + + ++++ Y
Sbjct: 557 MKLAQDWLDIP--QVLDPADMVNPK-VDELSMMTY 588
>SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 265 PTSSSWRTFKGSKRQSRNTEYQKKKYSKPPIFLRGVTFPK*HYVCTLWE 411
P + ++T + R E+Q+K+Y L+G TF + LW+
Sbjct: 51 PNTEKYKTEEALNRSRAYLEFQRKRYGNLYQLLKGNTFTDAEDLVKLWD 99
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,748,359
Number of Sequences: 59808
Number of extensions: 596241
Number of successful extensions: 1447
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1437
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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