Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_C07
         (669 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    29   0.046
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    25   0.56 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.3  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   5.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   5.2  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   5.2  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            22   5.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   5.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   5.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   6.9  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 0.046
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +2

Query: 200 GSLQNTDDMRLSRGLRCECAGARACPDGSSNGTC 301
           GSL   D   + RGL C   G + C DGS   TC
Sbjct: 120 GSLACGDGNCIERGLFCN--GEKDCSDGSDENTC 151


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 456 FGC*CGTCELLHCIKPDSSAERHPAV 379
           FGC  GT E L C +     ER P +
Sbjct: 66  FGCLVGTPETLRCQREGFFHEREPCI 91


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +2

Query: 287 SNGTCVTQVGGY 322
           +NGTC+ +VGG+
Sbjct: 271 NNGTCLDKVGGF 282


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 497 RLHPQLSEPSPDVTESPGVRPPITSS 574
           ++ P +   +  + ES   +PP+TSS
Sbjct: 100 QIRPPILHDTQPMCESLNTQPPVTSS 125


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 497 RLHPQLSEPSPDVTESPGVRPPITSS 574
           ++ P +   +  + ES   +PP+TSS
Sbjct: 100 QIRPPILHDTQPMCESLNTQPPVTSS 125


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/33 (24%), Positives = 14/33 (42%)
 Frame = +3

Query: 108 PVFXLGGVKIKSAPXGGVPSYI*MXXQNRDWAR 206
           P+F +GG ++        PS +      + W R
Sbjct: 358 PLFHMGGDEVHLGCWNSTPSIVQWMQDQKGWGR 390


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 15/58 (25%), Positives = 23/58 (39%)
 Frame = +2

Query: 347 LDESGSVVLDRTAGCLSADESGLMQCKSSQVPHQHPKVIECCYDDDLCNLRLHPQLSE 520
           LD+   VV+   +    A   G     +S  PH     IE C +    N +  P ++E
Sbjct: 14  LDDDDFVVVKTRSNSPEAGGGGFWLAAASGAPHPAALPIEGCNETGFINSQ--PSMAE 69


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 497 RLHPQLSEPSPDVTESPGVRPPITSS 574
           ++ P +   +  + ES   +PP+TSS
Sbjct: 100 QIRPPILHDTQPMCESLNTQPPVTSS 125


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 15/58 (25%), Positives = 23/58 (39%)
 Frame = +2

Query: 347 LDESGSVVLDRTAGCLSADESGLMQCKSSQVPHQHPKVIECCYDDDLCNLRLHPQLSE 520
           LD+   VV+   +    A   G     +S  PH     IE C +    N +  P ++E
Sbjct: 14  LDDDDFVVVKTRSNSPEAGGGGFWLAAASGAPHPAALPIEGCNETGFINSQ--PSMAE 69


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 599 ERWRPIRWDCS*SGAAPPGTPS 534
           +R R   W  S SG  PP TPS
Sbjct: 99  KRQRTDDWLSSPSGNVPPLTPS 120


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,698
Number of Sequences: 336
Number of extensions: 2149
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)