Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_C07
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22670| Best HMM Match : Pkinase (HMM E-Value=0)                     61   7e-10
SB_1933| Best HMM Match : PI3_PI4_kinase (HMM E-Value=4.06377e-44)     30   1.5  
SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)                   29   2.6  
SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_16748| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_22670| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 662

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
 Frame = +2

Query: 230 LSRGLRCECAGARACPDGSSNGTCVTQVGGYCFVAVEEVLDESGSVVLDRTAGCLSADES 409
           +S+ +RC+C+   +CP    N TC T   G C+   +++ +E G  ++  T GCL  +E 
Sbjct: 184 VSQAIRCKCS-EHSCPGDRINDTCTTT--GKCY---KKIAEEEGYELI--TYGCLPPEEQ 235

Query: 410 GLMQCKSSQVPHQHPKVIECCYDDDLCNLRLHPQLSEP-SPDV 535
             MQC +    H++   + CC + DLCN  L P    P SP +
Sbjct: 236 TDMQCNTPASVHRNKISVLCCNNRDLCNFELDPTFPPPTSPTI 278


>SB_1933| Best HMM Match : PI3_PI4_kinase (HMM E-Value=4.06377e-44)
          Length = 915

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 128 CKNKVGAXRRRSELYLNXXA---ESGLGSLQNTDDMRLSR 238
           C       RR S L+LN  +    SG+GSL N  D+R  R
Sbjct: 353 CSRAFNLIRRHSNLFLNLLSLMLNSGIGSLGNVSDLRYIR 392


>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
          Length = 2865

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 434  QVPHQHPKVIECCYDDDLCNLRLHPQLSEPSPDVTESPGVRPPITSSPT 580
            Q+  +    + C  +  LCN    P    PSP +  SP   P  + SP+
Sbjct: 1610 QIRKRACSTLSCQIESKLCNAIPCPASPSPSPSILPSPSSSPSPSPSPS 1658


>SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +2

Query: 269 ACPDGSSN-GTCVTQVGGYCFVAVEEVLDESGSVVLDRTAGCLSADESGLMQCKSSQVPH 445
           AC D  S+ G+   Q    C++   E++++   +   +  GC+ + +     C +    H
Sbjct: 151 ACSDCMSHDGSLGCQTFHGCYL---ELIEQEDKIA--KKYGCIESKKQYAAICNTRSSAH 205

Query: 446 QHPKVIECCYDDDLCN 493
             P++   C   ++CN
Sbjct: 206 ARPRITVTCCRGEMCN 221


>SB_16748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/58 (31%), Positives = 21/58 (36%)
 Frame = +2

Query: 254 CAGARACPDGSSNGTCVTQVGGYCFVAVEEVLDESGSVVLDRTAGCLSADESGLMQCK 427
           CA    C DG +  TC T   GY     +  +DE  S      A C     S    CK
Sbjct: 213 CANGGTCTDGINGFTC-TCPAGYNGSTCDNDIDECASNPCQNGATCNDGVNSYTCSCK 269


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,499,251
Number of Sequences: 59808
Number of extensions: 306990
Number of successful extensions: 982
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)