Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_C06
         (791 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.15 
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  29   4.3  
SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065)                 28   10.0 

>SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 904

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 236 CCSYMG-HPDLLSYFAIVENESKARVKFNLMERMLQPCGPPPEKP 367
           CCS     P L  ++AI    S++RV  N   R+   CG PP  P
Sbjct: 322 CCSSSNVKPSLEQFYAIFHIASRSRVSGNNRGRLASKCGIPPTSP 366


>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +2

Query: 164 SKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSY 274
           S +   GH     YE  M QH  S C Y    D + Y
Sbjct: 887 SLWADQGHCKNVVYEDFMKQHCKSTCGYCACKDAIKY 923


>SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065)
          Length = 1033

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 197 TKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENESKARVKFNLMERMLQPCGPPPE 361
           T  + L++ + +  C  + +P L  YFA   NE++ ++ F    + L+  G  PE
Sbjct: 578 TMAQQLISGNLEELCRTITNPGLFVYFAHNRNETQRQLDFLCYWKALKSRGHKPE 632


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,362,760
Number of Sequences: 59808
Number of extensions: 386386
Number of successful extensions: 627
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)