Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_C04
         (702 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D564F2 Cluster: PREDICTED: similar to CG3009-PA;...    37   0.55 
UniRef50_Q7TP10 Cluster: Cc2-36; n=1; Rattus norvegicus|Rep: Cc2...    33   9.0  

>UniRef50_UPI0000D564F2 Cluster: PREDICTED: similar to CG3009-PA;
           n=2; Endopterygota|Rep: PREDICTED: similar to CG3009-PA
           - Tribolium castaneum
          Length = 242

 Score = 36.7 bits (81), Expect = 0.55
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 47  IIRNHCKNSLCNNKKYIIGHCGCH*VYNREIRNLSTE 157
           ++R  C+  +CN+  +   HC C   + R ++N++TE
Sbjct: 129 LLRGECRQGICNDSPFTRSHCDCDATFRRCLQNVNTE 165


>UniRef50_Q7TP10 Cluster: Cc2-36; n=1; Rattus norvegicus|Rep: Cc2-36
           - Rattus norvegicus (Rat)
          Length = 161

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -1

Query: 306 WPRQIWRHRGPRDVNVTANTYGVLITRRVRGICNEECIQTFKATKICT 163
           W R++WR + P   N   +T  +L+  R R +    C+ +  + ++CT
Sbjct: 11  WQRRLWRSKRPNPENEPFSTSDILLLPRARAVM---CLSSTLSCRVCT 55


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,038,335
Number of Sequences: 1657284
Number of extensions: 11636879
Number of successful extensions: 27041
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27028
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)