Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_C04
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    29   0.85 
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    28   1.5  
SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.5  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    26   6.0  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    26   6.0  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    26   6.0  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    26   6.0  
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    25   7.9  

>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 535 PRMKLWRMQNCNKLRVQLHCTR 470
           PR +++R+ NCNKL+ Q+   R
Sbjct: 104 PRSEIYRLANCNKLQFQISLLR 125


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/68 (25%), Positives = 36/68 (52%)
 Frame = +3

Query: 486 CTLNLLQFCIRQSFMRGKF*VLDYSVXRLYLVLKSDYSYSDLCNSFYRAVSLLYGVISVI 665
           C++NL++    +S  + K  + D  V  LYL  + ++S+     ++ +A+S+L  V ++ 
Sbjct: 735 CSINLMENVEEESIDKIKDILFDIHVDNLYLFPQLEHSFYKRKKNYEKALSVL--VTNIH 792

Query: 666 DRRNSHHY 689
           D +    Y
Sbjct: 793 DYKGGEAY 800


>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 169 NFSGLKSLNALLVAYPANAPRYENPVGIGGHVDVARTA 282
           N  GLKS+ ALL+     A    N +G+ G    A TA
Sbjct: 180 NLFGLKSVYALLLGENNAASNATNEMGMAGFSSAAATA 217


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +1

Query: 316 KLIGNYI--SLQCYLQILAFSDCVIKCFLPSEILYSEPKRIL 435
           K+I N I  S  C+   +A   C+I C L   I +  P R L
Sbjct: 184 KIILNTIVTSFICWSNAIALGFCIIACILWRMIFFKVPARAL 225


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +1

Query: 316 KLIGNYI--SLQCYLQILAFSDCVIKCFLPSEILYSEPKRIL 435
           K+I N I  S  C+   +A   C+I C L   I +  P R L
Sbjct: 184 KIILNTIVTSFICWSNAIALGFCIIACILWRMIFFKVPARAL 225


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +1

Query: 316 KLIGNYI--SLQCYLQILAFSDCVIKCFLPSEILYSEPKRIL 435
           K+I N I  S  C+   +A   C+I C L   I +  P R L
Sbjct: 184 KIILNTIVTSFICWSNAIALGFCIIACILWRMIFFKVPARAL 225


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +1

Query: 316 KLIGNYI--SLQCYLQILAFSDCVIKCFLPSEILYSEPKRIL 435
           K+I N I  S  C+   +A   C+I C L   I +  P R L
Sbjct: 184 KIILNTIVTSFICWSNAIALGFCIIACILWRMIFFKVPARAL 225


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 2   GRQPXRDAPRSF--TFKIIRNHCKNSLCNN 85
           G +P +  P  F  T+KII NH K+   +N
Sbjct: 186 GNEPLQVGPTFFLRTYKIIDNHAKSGYISN 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,256
Number of Sequences: 5004
Number of extensions: 50690
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)