Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_C04
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510...    30   1.5  
08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887     29   4.7  
01_06_1637 - 38805609-38805719,38805872-38806017,38806115-388062...    28   8.3  

>03_02_0027 +
           5100865-5100878,5102241-5102708,5102795-5103021,
           5103670-5104577
          Length = 538

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
 Frame = +1

Query: 184 KSLNALLVAYP--ANAPRYENPVGI--GGHVDVARTAVPPYL 297
           +SL + + A P  A AP+Y +P+G+  GGH + A  A PP L
Sbjct: 284 QSLLSSMFAPPSVAQAPQYADPIGVGAGGHQERAVPAKPPAL 325


>08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887
          Length = 1205

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +1

Query: 169 NFSGLKSLNALLVAYPANAPRYENPVGIGGHVDVARTAVPPYLSRPQLAKLIGNYISLQC 348
           + S L+  N + + +P+N  R    +    HV+VAR  VP     P+  KL+ + I    
Sbjct: 291 DLSSLEEWNKIKICFPSN-DRGSRIILCTEHVEVARLCVPQDSVPPEHKKLLDDQIIYAF 349

Query: 349 Y 351
           Y
Sbjct: 350 Y 350


>01_06_1637 -
           38805609-38805719,38805872-38806017,38806115-38806220,
           38806347-38806424,38806682-38806735,38806997-38807075,
           38807136-38807260,38807441-38807530,38807635-38807714,
           38807837-38807963,38808076-38808158,38808309-38808438
          Length = 402

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 451 ARRPVLIGCNA--VALLTYCNFAFAKVSCAESFKC 549
           A++ +L GC+A  +A L +CN  +A+ S   S KC
Sbjct: 168 AKQAILSGCSAGGLAALLHCNDFYARFSKEVSAKC 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,462,483
Number of Sequences: 37544
Number of extensions: 309843
Number of successful extensions: 739
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)