Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_C04
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47706| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_57853| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_40069| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  

>SB_47706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
 Frame = +1

Query: 289 PYLSRPQLAKLIGNYISLQCYLQILAFSDCVIKCFLPSEILYSEPKRILFRKEG------ 450
           P+++ P+ A +    +++ CY+ I     C++    P+EI+ SE   + F  +       
Sbjct: 235 PHVNLPRAALIALPLVTI-CYILINMAYLCILS---PAEIISSEAVAVTFADKVNHPIIM 290

Query: 451 ARRPVLIGCNAVALLTYCNFAFAKVSCA 534
           A  P+L+ C+         F  AKV CA
Sbjct: 291 ALIPILVSCSCFGAANSSIFTNAKVVCA 318


>SB_57853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 313

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = -3

Query: 454 ARLPF*TESVWVHYRVSPKVKNTLLHNH*MPESVSNTVD*YNYLLILLVVAETDMAAPRS 275
           AR+PF + + W+  RVS +        H  P   +N  D   YL  + +  +  +   R+
Sbjct: 188 ARIPFTSRAAWLPIRVSVEHTPICDREHTPPRKTTNVKDVKRYLNAVTIAKDGLLVVKRT 247

Query: 274 ARRQRDRQ 251
              Q +R+
Sbjct: 248 EPLQPNRE 255


>SB_40069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -3

Query: 343 VD*YNYLLILLVVAETDMAAPRSARRQRDRQYLRGSHNEARSRDMQRGVHSN 188
           VD  ++ +   V   TD  AP+S RRQ  RQ +     E+ +   Q    +N
Sbjct: 61  VDGSHFAVTAAVRPLTDERAPKSTRRQESRQDIHTQRTESTTMQSQETCRTN 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,020,066
Number of Sequences: 59808
Number of extensions: 395514
Number of successful extensions: 858
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)