Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_C04
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67953-4|AAL13329.1|  732|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical ...    28   7.4  
AC006676-5|AAK71383.2|  172|Caenorhabditis elegans Hypothetical ...    28   7.4  

>U67953-4|AAL13329.1|  732|Caenorhabditis elegans Hypothetical
           protein ZC13.3 protein.
          Length = 732

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +2

Query: 458 GRFLSGAMQLHS*LIAILHSPKFHARKVLSVRLF 559
           G+F+S  +      IAIL SPKF+A + L+V LF
Sbjct: 592 GQFVSAILDAED--IAILESPKFNATRSLNVLLF 623


>AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8b protein.
          Length = 219

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 301 ETDMAAPRSARRQRDRQYLRGSHNEARSRDMQRGVHS 191
           E D        R+RDR+  R   N  R RD +RG  S
Sbjct: 124 EKDRRKMHKTSRERDRESHRKRSNSPRDRDRKRGKRS 160


>AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8a protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 301 ETDMAAPRSARRQRDRQYLRGSHNEARSRDMQRGVHS 191
           E D        R+RDR+  R   N  R RD +RG  S
Sbjct: 250 EKDRRKMHKTSRERDRESHRKRSNSPRDRDRKRGKRS 286


>AC006676-5|AAK71383.2|  172|Caenorhabditis elegans Hypothetical
           protein M04F3.4 protein.
          Length = 172

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -3

Query: 415 YRVSPKVKNTLLHNH*MPESVSNTVD*YNYLLILLVVAETDMAAPRSARRQRD 257
           YR+SP+  N L+H      S SN ++ ++  + L VV +T  AA R     RD
Sbjct: 104 YRLSPQFYNILMHK--FDRSHSNRIN-FDDFIQLCVVLQTLTAAFRDVDTDRD 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,725,538
Number of Sequences: 27780
Number of extensions: 290467
Number of successful extensions: 726
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)