Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_C03
(532 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62875 Cluster: DNA-directed RNA polymerases I, II, and... 141 8e-33
UniRef50_Q9GR61 Cluster: DNA-directed RNA polymerases I, II, and... 132 6e-30
UniRef50_O13877 Cluster: DNA-directed RNA polymerases I, II, and... 117 2e-25
UniRef50_P22139 Cluster: DNA-directed RNA polymerases I, II, and... 111 7e-24
UniRef50_Q4N5Q3 Cluster: DNA-directed RNA polymerase subunit N, ... 102 6e-21
UniRef50_Q8SRS6 Cluster: DNA-directed RNA polymerases I, II, and... 93 4e-18
UniRef50_Q57XV8 Cluster: DNA-directed RNA polymerase subunit, pu... 86 4e-16
UniRef50_UPI0000D9ABE2 Cluster: PREDICTED: similar to DNA-direct... 84 2e-15
UniRef50_Q4QG42 Cluster: DNA-directed RNA polymerase ii 8.2 Kd p... 81 1e-14
UniRef50_UPI0000498805 Cluster: DNA-directed RNA polymerase subu... 79 8e-14
UniRef50_UPI00005A37B8 Cluster: PREDICTED: similar to DNA-direct... 73 4e-12
UniRef50_A0RY12 Cluster: DNA-directed RNA polymerase, subunit N;... 70 4e-11
UniRef50_A7DRE1 Cluster: RNA polymerase N/8 Kd subunit; n=1; Can... 69 7e-11
UniRef50_Q9YB47 Cluster: DNA-directed RNA polymerase subunit N; ... 69 7e-11
UniRef50_O29135 Cluster: DNA-directed RNA polymerase subunit N; ... 65 8e-10
UniRef50_Q9HL09 Cluster: DNA-directed RNA polymerase subunit N; ... 65 1e-09
UniRef50_UPI00003C8433 Cluster: hypothetical protein Faci_030006... 64 3e-09
UniRef50_Q2QWW6 Cluster: Expressed protein; n=3; Oryza sativa|Re... 60 3e-08
UniRef50_O26147 Cluster: DNA-directed RNA polymerase subunit N; ... 59 5e-08
UniRef50_Q57649 Cluster: DNA-directed RNA polymerase subunit N; ... 58 2e-07
UniRef50_A7EKK8 Cluster: Putative uncharacterized protein; n=1; ... 56 5e-07
UniRef50_Q00ZB8 Cluster: Chromosome 11 contig 1, DNA sequence; n... 49 6e-05
UniRef50_Q4A2W7 Cluster: Putative DNA-directed RNA polymerase su... 49 8e-05
UniRef50_UPI0001553028 Cluster: PREDICTED: polymerase (RNA) II (... 44 0.002
UniRef50_Q9LPY7 Cluster: T23J18.14; n=1; Arabidopsis thaliana|Re... 42 0.009
UniRef50_O55725 Cluster: 107L; n=1; Invertebrate iridescent viru... 33 4.1
UniRef50_Q8X9N3 Cluster: No significant matches; n=7; Escherichi... 33 5.4
UniRef50_Q7QNW4 Cluster: GLP_474_3257_9448; n=1; Giardia lamblia... 32 9.5
>UniRef50_P62875 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC5; n=51; cellular organisms|Rep:
DNA-directed RNA polymerases I, II, and III subunit
RPABC5 - Homo sapiens (Human)
Length = 67
Score = 141 bits (342), Expect = 8e-33
Identities = 61/67 (91%), Positives = 65/67 (97%)
Frame = +2
Query: 251 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLL 430
MIIPVRCFTCGK++GNKWEAYLGLLQA+YTEGDALD LGLKRYCCRRMLL HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 431 NYSPLEK 451
NY+PLEK
Sbjct: 61 NYAPLEK 67
>UniRef50_Q9GR61 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC5; n=11; Eukaryota|Rep: DNA-directed
RNA polymerases I, II, and III subunit RPABC5 -
Caenorhabditis elegans
Length = 67
Score = 132 bits (318), Expect = 6e-30
Identities = 56/67 (83%), Positives = 62/67 (92%)
Frame = +2
Query: 251 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLL 430
MIIP+RCFTCGKVIG+KWE YLG LQ++Y+EGDALD LGL+RYCCRRMLL HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGDKWETYLGFLQSEYSEGDALDALGLRRYCCRRMLLAHVDLIEKLL 60
Query: 431 NYSPLEK 451
NY PLEK
Sbjct: 61 NYHPLEK 67
>UniRef50_O13877 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC5; n=3; Eukaryota|Rep: DNA-directed RNA
polymerases I, II, and III subunit RPABC5 -
Schizosaccharomyces pombe (Fission yeast)
Length = 71
Score = 117 bits (281), Expect = 2e-25
Identities = 51/67 (76%), Positives = 59/67 (88%)
Frame = +2
Query: 251 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLL 430
MIIP+RCF+CGKVIG+KW+ YL LLQ D TEG+ALD LGL+RYCCRRM+L HVDLIEKLL
Sbjct: 1 MIIPIRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLL 60
Query: 431 NYSPLEK 451
Y+PL K
Sbjct: 61 CYNPLSK 67
>UniRef50_P22139 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC5; n=20; cellular organisms|Rep:
DNA-directed RNA polymerases I, II, and III subunit
RPABC5 - Saccharomyces cerevisiae (Baker's yeast)
Length = 70
Score = 111 bits (268), Expect = 7e-24
Identities = 50/68 (73%), Positives = 57/68 (83%), Gaps = 1/68 (1%)
Frame = +2
Query: 251 MIIPVRCFTCGKVIGNKWEAYLGLLQAD-YTEGDALDVLGLKRYCCRRMLLGHVDLIEKL 427
MI+PVRCF+CGKV+G+KWE+YL LLQ D EG AL LGLKRYCCRRM+L HVDLIEK
Sbjct: 1 MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKF 60
Query: 428 LNYSPLEK 451
L Y+PLEK
Sbjct: 61 LRYNPLEK 68
>UniRef50_Q4N5Q3 Cluster: DNA-directed RNA polymerase subunit N,
putative; n=3; Eukaryota|Rep: DNA-directed RNA
polymerase subunit N, putative - Theileria parva
Length = 87
Score = 102 bits (244), Expect = 6e-21
Identities = 46/63 (73%), Positives = 52/63 (82%)
Frame = +2
Query: 251 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLL 430
MIIPVRCFTCGKVIG+ WE +L +L+ D EG ALD LGL RYCCRRM+L HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGHLWEKWLEMLKKDIPEGQALDDLGLTRYCCRRMILTHVDLIEKLL 60
Query: 431 NYS 439
Y+
Sbjct: 61 VYN 63
>UniRef50_Q8SRS6 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC5; n=9; cellular organisms|Rep:
DNA-directed RNA polymerases I, II, and III subunit
RPABC5 - Encephalitozoon cuniculi
Length = 72
Score = 93.1 bits (221), Expect = 4e-18
Identities = 38/62 (61%), Positives = 49/62 (79%)
Frame = +2
Query: 251 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLL 430
MIIP+RCFTCGK I +KWE Y LL+ D + +ALD LG++R CCRRM LGHVD+++KLL
Sbjct: 1 MIIPIRCFTCGKEISSKWEPYQELLKIDKGKAEALDELGMRRICCRRMFLGHVDIVDKLL 60
Query: 431 NY 436
+
Sbjct: 61 KF 62
>UniRef50_Q57XV8 Cluster: DNA-directed RNA polymerase subunit,
putative; n=5; Trypanosomatidae|Rep: DNA-directed RNA
polymerase subunit, putative - Trypanosoma brucei
Length = 84
Score = 86.2 bits (204), Expect = 4e-16
Identities = 36/63 (57%), Positives = 48/63 (76%)
Frame = +2
Query: 251 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLL 430
M+IPVRC++CGKV+G+ +E Y LL D+TE +AL+ L L R CCRRM+L H+DL + LL
Sbjct: 1 MLIPVRCYSCGKVVGHLYELYQELLNQDHTEAEALNALRLSRMCCRRMILSHIDLADDLL 60
Query: 431 NYS 439
YS
Sbjct: 61 PYS 63
>UniRef50_UPI0000D9ABE2 Cluster: PREDICTED: similar to DNA-directed
RNA polymerase II 7.6 kDa polypeptide (RPB10) (RPB7.6)
(RPABC5); n=2; Macaca mulatta|Rep: PREDICTED: similar to
DNA-directed RNA polymerase II 7.6 kDa polypeptide
(RPB10) (RPB7.6) (RPABC5) - Macaca mulatta
Length = 107
Score = 84.2 bits (199), Expect = 2e-15
Identities = 44/65 (67%), Positives = 48/65 (73%), Gaps = 2/65 (3%)
Frame = +2
Query: 263 VRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRY--CCRRMLLGHVDLIEKLLNY 436
VRCFTC K +GN WEAYLGLLQA YT+ DA L LK Y CC MLL HVDLI+KLLNY
Sbjct: 48 VRCFTCSKTVGNTWEAYLGLLQAKYTDRDA---LRLKHYSHCC--MLLAHVDLIQKLLNY 102
Query: 437 SPLEK 451
+ L K
Sbjct: 103 ALLGK 107
>UniRef50_Q4QG42 Cluster: DNA-directed RNA polymerase ii 8.2 Kd
polypeptide, putative; n=3; Leishmania|Rep: DNA-directed
RNA polymerase ii 8.2 Kd polypeptide, putative -
Leishmania major
Length = 89
Score = 81.4 bits (192), Expect = 1e-14
Identities = 34/66 (51%), Positives = 48/66 (72%)
Frame = +2
Query: 251 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLL 430
MIIPVRCFTCG VI +K+ YL L+ +E DA++ L+R+CCRRM+L HVD+ + LL
Sbjct: 1 MIIPVRCFTCGNVIADKYLLYLDLVSQGVSEEDAMNAFHLERFCCRRMMLTHVDMTDLLL 60
Query: 431 NYSPLE 448
++P +
Sbjct: 61 KFNPAD 66
>UniRef50_UPI0000498805 Cluster: DNA-directed RNA polymerase subunit
N; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase subunit N - Entamoeba
histolytica HM-1:IMSS
Length = 73
Score = 78.6 bits (185), Expect = 8e-14
Identities = 37/63 (58%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Frame = +2
Query: 251 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGD-ALDVLGLKRYCCRRMLLGHVDLIEKL 427
MIIPVRCFTCGKVIGNKWE +L L D LG++RYCC+RML+ HV+LI L
Sbjct: 1 MIIPVRCFTCGKVIGNKWEKFLELATGGKVPMDQVFSELGIERYCCKRMLVSHVNLIGFL 60
Query: 428 LNY 436
Y
Sbjct: 61 SMY 63
>UniRef50_UPI00005A37B8 Cluster: PREDICTED: similar to DNA-directed
RNA polymerase II 7.6 kDa polypeptide (RPB10) (RPB7.6)
(RPABC5); n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to DNA-directed RNA polymerase II 7.6 kDa
polypeptide (RPB10) (RPB7.6) (RPABC5) - Canis familiaris
Length = 154
Score = 72.9 bits (171), Expect = 4e-12
Identities = 32/35 (91%), Positives = 33/35 (94%)
Frame = +2
Query: 347 DALDVLGLKRYCCRRMLLGHVDLIEKLLNYSPLEK 451
DALD LGLKRYCCRRMLL HVDLIEKLLNY+PLEK
Sbjct: 120 DALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK 154
>UniRef50_A0RY12 Cluster: DNA-directed RNA polymerase, subunit N;
n=1; Cenarchaeum symbiosum|Rep: DNA-directed RNA
polymerase, subunit N - Cenarchaeum symbiosum
Length = 78
Score = 69.7 bits (163), Expect = 4e-11
Identities = 26/62 (41%), Positives = 43/62 (69%)
Frame = +2
Query: 251 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLL 430
M++PVRCFTCG ++ +K+ Y ++A G LD LG++RYCCRRML ++ I++++
Sbjct: 1 MLVPVRCFTCGNLVADKFGEYKSRVEAGEAPGKVLDSLGMERYCCRRMLFTSIETIQQII 60
Query: 431 NY 436
+
Sbjct: 61 PF 62
>UniRef50_A7DRE1 Cluster: RNA polymerase N/8 Kd subunit; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: RNA
polymerase N/8 Kd subunit - Candidatus Nitrosopumilus
maritimus SCM1
Length = 90
Score = 68.9 bits (161), Expect = 7e-11
Identities = 28/63 (44%), Positives = 45/63 (71%)
Frame = +2
Query: 248 KMIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKL 427
+M+IPVRCFTCG +I +K++ Y ++A L+ LG++RYCCRRMLL V+ I+++
Sbjct: 12 RMLIPVRCFTCGNLIADKYDDYQNKIKAGEDPEKTLESLGIERYCCRRMLLTTVETIQQV 71
Query: 428 LNY 436
+ +
Sbjct: 72 IPF 74
>UniRef50_Q9YB47 Cluster: DNA-directed RNA polymerase subunit N;
n=1; Aeropyrum pernix|Rep: DNA-directed RNA polymerase
subunit N - Aeropyrum pernix
Length = 77
Score = 68.9 bits (161), Expect = 7e-11
Identities = 30/62 (48%), Positives = 39/62 (62%)
Frame = +2
Query: 251 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLL 430
M+ PVRCFTCG+ +G+ W + L+ + T G+ALD LG+ RYCCRR L V IE
Sbjct: 1 MLPPVRCFTCGRPLGHLWPRFRELVASGKTPGEALDELGVDRYCCRRTLFTSVTYIEHAA 60
Query: 431 NY 436
Y
Sbjct: 61 KY 62
>UniRef50_O29135 Cluster: DNA-directed RNA polymerase subunit N;
n=1; Archaeoglobus fulgidus|Rep: DNA-directed RNA
polymerase subunit N - Archaeoglobus fulgidus
Length = 76
Score = 65.3 bits (152), Expect = 8e-10
Identities = 27/64 (42%), Positives = 41/64 (64%)
Frame = +2
Query: 245 NKMIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEK 424
N P+RCF+CG VIG+ ++ Y L + +ALD LG++RYCCRRM + H +I++
Sbjct: 8 NSSDFPIRCFSCGAVIGHLYDEYKQKLSEGKSPKEALDELGIERYCCRRMFITHKSVIKE 67
Query: 425 LLNY 436
L +
Sbjct: 68 LSRF 71
>UniRef50_Q9HL09 Cluster: DNA-directed RNA polymerase subunit N;
n=33; root|Rep: DNA-directed RNA polymerase subunit N -
Thermoplasma acidophilum
Length = 72
Score = 64.9 bits (151), Expect = 1e-09
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 9/72 (12%)
Frame = +2
Query: 251 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEG---------DALDVLGLKRYCCRRMLLG 403
MIIPVRCF+CG+VI + + Y+ + EG D LG++RYCCRRM++
Sbjct: 1 MIIPVRCFSCGRVIASDYGRYIKRVNEIKAEGRDPSPEEIEKIFDDLGIERYCCRRMIVS 60
Query: 404 HVDLIEKLLNYS 439
HVDLI +++ +S
Sbjct: 61 HVDLISEIMPFS 72
>UniRef50_UPI00003C8433 Cluster: hypothetical protein Faci_03000692;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000692 - Ferroplasma acidarmanus fer1
Length = 73
Score = 63.7 bits (148), Expect = 3e-09
Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 10/73 (13%)
Frame = +2
Query: 251 MIIPVRCFTCGKVIGNKWEAYL----------GLLQADYTEGDALDVLGLKRYCCRRMLL 400
MIIPVRCF+CGKVIG+ + ++ G + + LD LG+ RYCCRRM+L
Sbjct: 1 MIIPVRCFSCGKVIGSDYVRFVEESKKIRKDTGHDPTGKEKSEILDNLGVDRYCCRRMIL 60
Query: 401 GHVDLIEKLLNYS 439
+ DL++++++YS
Sbjct: 61 SNADLLDEVISYS 73
>UniRef50_Q2QWW6 Cluster: Expressed protein; n=3; Oryza sativa|Rep:
Expressed protein - Oryza sativa subsp. japonica (Rice)
Length = 202
Score = 60.1 bits (139), Expect = 3e-08
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = +2
Query: 347 DALDVLGLKRYCCRRMLLGHVDLIEKLLNYS 439
DALD LGL RYCCRRML+ HVDLIEKLLNY+
Sbjct: 156 DALDALGLVRYCCRRMLMTHVDLIEKLLNYN 186
Score = 46.0 bits (104), Expect = 5e-04
Identities = 21/32 (65%), Positives = 24/32 (75%)
Frame = +2
Query: 284 KVIGNKWEAYLGLLQADYTEGDALDVLGLKRY 379
KVIGNKW+ YL LLQADYTEG + G +RY
Sbjct: 93 KVIGNKWDLYLDLLQADYTEGGSGRQRGEERY 124
>UniRef50_O26147 Cluster: DNA-directed RNA polymerase subunit N;
n=3; Archaea|Rep: DNA-directed RNA polymerase subunit N
- Methanobacterium thermoautotrophicum
Length = 55
Score = 59.3 bits (137), Expect = 5e-08
Identities = 26/53 (49%), Positives = 33/53 (62%)
Frame = +2
Query: 254 IIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVD 412
+IPVRC +CGK + + Y + D LD LGLKRYCCRRML+ HV+
Sbjct: 1 MIPVRCLSCGKPVSAYFNEYQRRVADGEDPKDVLDDLGLKRYCCRRMLISHVE 53
>UniRef50_Q57649 Cluster: DNA-directed RNA polymerase subunit N;
n=6; Methanococcales|Rep: DNA-directed RNA polymerase
subunit N - Methanococcus jannaschii
Length = 73
Score = 57.6 bits (133), Expect = 2e-07
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +2
Query: 251 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGH 406
M+ P+RCF+CG VI +E Y + D LD LG+K+YCCRRM + +
Sbjct: 1 MMFPIRCFSCGNVIAEVFEEYKERILKGENPKDVLDDLGIKKYCCRRMFISY 52
>UniRef50_A7EKK8 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 200
Score = 56.0 bits (129), Expect = 5e-07
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +2
Query: 353 LDVLGLKRYCCRRMLLGHVDLIEKLLNYSPLEK 451
+D L LKRYCCRRM++ HVDLIEKLL Y+P E+
Sbjct: 1 MDELTLKRYCCRRMIMTHVDLIEKLLRYNPAER 33
>UniRef50_Q00ZB8 Cluster: Chromosome 11 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 11 contig 1, DNA
sequence - Ostreococcus tauri
Length = 389
Score = 49.2 bits (112), Expect = 6e-05
Identities = 24/62 (38%), Positives = 35/62 (56%)
Frame = -1
Query: 436 IIQQFFNEIHVSEQHSSAAVSFQSKDIQSITFCVIRL*QA*VSFPFVSYNFPACETSYWN 257
I QQ +EI V+ H S AV Q++ +Q + V+RL + V PFV + PA E + N
Sbjct: 216 IPQQLLDEIDVTHHHPSTAVPLQTQRVQGVALAVVRLQEIQVGVPFVPDHLPAREAPHGN 275
Query: 256 NH 251
+H
Sbjct: 276 DH 277
>UniRef50_Q4A2W7 Cluster: Putative DNA-directed RNA polymerase
subunit; n=1; Emiliania huxleyi virus 86|Rep: Putative
DNA-directed RNA polymerase subunit - Emiliania huxleyi
virus 86
Length = 86
Score = 48.8 bits (111), Expect = 8e-05
Identities = 23/51 (45%), Positives = 32/51 (62%)
Frame = +2
Query: 251 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLG 403
M+ P+RC TC +I K+ Y L+ ++ DAL +G+K YCCRRM LG
Sbjct: 1 MLPPIRCCTCNDLI--KFREYDEQLRNKSSQSDALSNIGVKMYCCRRMYLG 49
>UniRef50_UPI0001553028 Cluster: PREDICTED: polymerase (RNA) II (DNA
directed) polypeptide L; n=1; Mus musculus|Rep:
PREDICTED: polymerase (RNA) II (DNA directed)
polypeptide L - Mus musculus
Length = 390
Score = 44.0 bits (99), Expect = 0.002
Identities = 22/52 (42%), Positives = 27/52 (51%)
Frame = +3
Query: 273 SHAGKL*ETNGKLT*ACYRRITQKVMLWMSLD*KDTAAEECCSDTWISLKNC 428
S AG+ TNGK T C R T++ M W TAA CC TW L++C
Sbjct: 331 SPAGRSSATNGKPTWVCCRPSTRRGMPWTLWAXSATAAAACCXHTWTXLRSC 382
>UniRef50_Q9LPY7 Cluster: T23J18.14; n=1; Arabidopsis thaliana|Rep:
T23J18.14 - Arabidopsis thaliana (Mouse-ear cress)
Length = 428
Score = 41.9 bits (94), Expect = 0.009
Identities = 21/37 (56%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +2
Query: 287 VIGNKWEAYLGLLQADYTEGDALDVLGL----KRYCC 385
VIGNKW+ YL LLQ DYTEG L + L YCC
Sbjct: 388 VIGNKWDQYLDLLQLDYTEGVKLMLCSLYVIGTDYCC 424
>UniRef50_O55725 Cluster: 107L; n=1; Invertebrate iridescent virus
6|Rep: 107L - Chilo iridescent virus (CIV) (Insect
iridescent virus type 6)
Length = 80
Score = 33.1 bits (72), Expect = 4.1
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +2
Query: 260 PVRCFTCGKVIGNKWEAYLGLLQADYTEG--DALDVLGLKRYCCRRMLLGHVDLIEKLLN 433
P+RCF+C K++ + E + ++ E R CC+RM L V+ ++L
Sbjct: 3 PIRCFSCNKIMKSPNEKGMVFVRNMKKEDREQFFKKFNYTRLCCKRMYLSAVNFQDELFQ 62
Query: 434 Y 436
Y
Sbjct: 63 Y 63
>UniRef50_Q8X9N3 Cluster: No significant matches; n=7; Escherichia
coli|Rep: No significant matches - Escherichia coli
O157:H7
Length = 156
Score = 32.7 bits (71), Expect = 5.4
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = -2
Query: 132 FYKVSVNLMRKHCNXMLCNAQDDLTSTEKLLRRATTRQRCIGRP 1
+++ SV +MRK+ +L ++ T +E+L+R A TR+ + RP
Sbjct: 88 WFQFSVYVMRKYYRHILVRGKETETISERLIREADTREYELWRP 131
>UniRef50_Q7QNW4 Cluster: GLP_474_3257_9448; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_474_3257_9448 - Giardia lamblia ATCC
50803
Length = 2063
Score = 31.9 bits (69), Expect = 9.5
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = -2
Query: 291 ITFPHVKHRTGIIILF 244
+TFP VKHRTG+II+F
Sbjct: 1 MTFPQVKHRTGMIIIF 16
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 478,643,514
Number of Sequences: 1657284
Number of extensions: 9058594
Number of successful extensions: 19382
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 18827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19363
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33873797511
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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