Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_C03
         (532 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   3.9  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   3.9  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    21   5.1  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   8.9  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 289 YRKQMGSLLRPATGGLHRR 345
           +R +  S LRPA+GG   R
Sbjct: 898 FRMKKSSALRPASGGTTAR 916


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 159 FTHNNNRRXFYKVSVN 112
           FTH  N+   YK++VN
Sbjct: 474 FTHLQNQDFTYKITVN 489


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 485 FLIVFFKKYFIIF 447
           F+I+FF  +FIIF
Sbjct: 4   FVILFFGVFFIIF 16


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 514 KNFMSIIDFYF*LCFLKNISLFF 446
           +NF   +DF F    L  I L+F
Sbjct: 439 RNFRKKLDFIFTFITLLTIGLYF 461


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,933
Number of Sequences: 336
Number of extensions: 2560
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12887571
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)