Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_C03
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.12c |rpb10||DNA-directed RNA polymerase I, II, and III s...   117   1e-27
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    27   1.7  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    27   2.3  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    26   3.0  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    26   4.0  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   4.0  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    26   4.0  
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    25   5.3  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    25   5.3  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   7.0  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   7.0  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   9.3  

>SPAC1B3.12c |rpb10||DNA-directed RNA polymerase I, II, and III
           subunit Rpb10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 71

 Score =  117 bits (281), Expect = 1e-27
 Identities = 51/67 (76%), Positives = 59/67 (88%)
 Frame = +2

Query: 251 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLL 430
           MIIP+RCF+CGKVIG+KW+ YL LLQ D TEG+ALD LGL+RYCCRRM+L HVDLIEKLL
Sbjct: 1   MIIPIRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLL 60

Query: 431 NYSPLEK 451
            Y+PL K
Sbjct: 61  CYNPLSK 67


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 357 SKASPSV*SACSRPK*ASHLFPITFPHVKHRTGI 256
           S +SPS  S  S P    HL P+T PH     G+
Sbjct: 2   SSSSPSSQSRLSVPGRTPHLPPLTIPHTVSAEGL 35


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +2

Query: 245 NKMIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALD-----VLGLKRYCCRRMLLGHV 409
           NK +   +C     V+ N  +A  G+   +   GD L+     +LGL     RR LLG +
Sbjct: 178 NKPLDNFKCIENNNVVINSAKAMGGISITNIGAGDILEGREHLILGLVWQIIRRGLLGKI 237

Query: 410 DL 415
           D+
Sbjct: 238 DI 239


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 449 FLMGNNSTVFQ*DPR-VRATFFCSSIFSIQGHPKHHLLCNPP 327
           F++ +  T F  +   + AT+    +   +G P     CNPP
Sbjct: 501 FIVNSRKTAFIVEHDFIMATYLADRVILFEGQPSRDARCNPP 542


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 33  RVSKVFLSKSNHLVHCKASHCSVSSLNLLILCK 131
           R SK+  SK++ L+H  A+H S+ S ++ I  K
Sbjct: 175 RASKLRQSKASALIHKSATHPSLDSCDVEITFK 207


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 283 ESYRKQM-GSLLRPATGGLHRR 345
           ES+RK   G+L  P  GG+HRR
Sbjct: 272 ESFRKHSNGNLSSPKIGGVHRR 293


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 439 GIIQQFFNEIHVSEQHSSAAVSFQSKDIQSITFCVIR 329
           G+I+   NE+H+S+  SS   S   +D++ I F   R
Sbjct: 463 GLIEST-NELHLSDSESSETSSSSEEDMEFIPFSARR 498


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 407 RVRATFFCSSIFSIQGHPKHHLLCNPPVAGLSKLPICFL*LSRM 276
           +V  TFF  +   I  H K   + N  V    ++P+C   + RM
Sbjct: 191 QVGPTFFLRTYKIIDNHAKSGYISNDLVMWKEEMPVCIAKMFRM 234


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 193 LILYNPSASPQL*VVGNKQNDYSSTMFHMRESYRKQMGSLLR 318
           L+  N   +PQ+ +     + Y+S   H++E+ RK+    +R
Sbjct: 341 LVALNSDVAPQVSIANIPPSVYASCPLHVQEAIRKRQEQEIR 382


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 274 ETSYWNNHFVYFLQPKV 224
           E   WNN+  +F+QPK+
Sbjct: 133 ENPNWNNYVRFFIQPKL 149


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 55  DRKTFETRNDKAEMHRPA 2
           D KT ET+ND  E+ RP+
Sbjct: 186 DDKTVETKNDVPEVSRPS 203


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 429 NSFSMRSTCPSNILLQQYLFNPRTSKASPSV*SACSRP 316
           +SFS R+  P+N+ +QQ +    +   +PS  SA S P
Sbjct: 255 HSFSARNI-PANVSMQQQMGRRGSIPVNPSTFSASSPP 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,098
Number of Sequences: 5004
Number of extensions: 41346
Number of successful extensions: 93
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)