Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_C02
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    28   1.8  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    28   1.8  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   3.1  
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    26   7.1  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    26   7.1  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    26   7.1  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   9.4  

>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 264 MTTASVPSTASCTESGSRTFPLTISTLSLRCSGS 163
           +TT S  +TASCT   S T   T +++S  C+G+
Sbjct: 762 VTTTSTTATASCTLPISYTSTPTTTSISGTCNGA 795


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/53 (24%), Positives = 29/53 (54%)
 Frame = +1

Query: 430 ERRPQENVPGSERQRLKLDSRVSATLHRRPKPRNDY*SEP*EDTGQDHCQVRP 588
           +R  QE +   ERQ+LKL++  +  + +R  P  ++ ++  ++  +   + RP
Sbjct: 158 QRLRQEQILNKERQQLKLNNFFTKGVEKRIAPNENFVADKTDELNEFEKEFRP 210


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -1

Query: 261 TTASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNARTSRPFLSAA--STAFKPI 88
           +T+SVP+    + S + + P+++++ S   SGS   S T   T     ++    T   PI
Sbjct: 259 STSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPI 318

Query: 87  TPVEPKITT 61
           T   P +++
Sbjct: 319 TTSAPSLSS 327


>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 703 PICRKVKRIFLHFFPCNFFY 762
           P C+KV R+FL FFP N+ +
Sbjct: 227 PDCQKV-RVFLAFFPTNWCF 245


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 357 LTFFALIASIMFLVPSDKSEVGARSFLVPRVM 262
           L   A + ++M +VP+    +G RS   P+VM
Sbjct: 4   LKLVASVLALMTIVPAQAGLIGKRSVFKPKVM 35


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 241 DGLMYRVWFENISFDYLDLVFKMFW 167
           D L    WF ++S DY+D + +  W
Sbjct: 21  DSLKKPNWFTDVSIDYVDELIEHLW 45


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 25/95 (26%), Positives = 41/95 (43%)
 Frame = -1

Query: 321 LVPSDKSEVGARSFLVPRVMTTASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTN 142
           L  S  S   + S +VP    T+S  +T S   + S + PL+ ST++   + +F  S  N
Sbjct: 662 LPTSSASTPSSNSSIVPTSTFTSSGFNTTSGLPTSSASTPLSNSTVA--PTSTFTSSGFN 719

Query: 141 ARTSRPFLSAASTAFKPITPVEPKITTFFILSLTV 37
             +  P  S ++             +TF  LS T+
Sbjct: 720 TTSGLPTSSVSTPLSNSSAYPSSGSSTFSRLSSTL 754


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,182
Number of Sequences: 5004
Number of extensions: 64176
Number of successful extensions: 196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)