Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_C02
(792 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05) 76 3e-14
SB_43953| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83) 30 2.5
SB_56714| Best HMM Match : 7tm_3 (HMM E-Value=1.6e-18) 29 3.3
SB_52562| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_52454| Best HMM Match : 3HCDH_N (HMM E-Value=1.3) 28 10.0
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36) 28 10.0
SB_12316| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
>SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05)
Length = 226
Score = 76.2 bits (179), Expect = 3e-14
Identities = 61/217 (28%), Positives = 101/217 (46%), Gaps = 16/217 (7%)
Frame = +2
Query: 56 KKVVIFGSTGVIGLNAVEAALKKGLEVRAFVRDPAKLPEHLKDKVEIVKGNVLEPDSVHE 235
KKVV+FG TG GL+ V+ AL +G V R P K+ D + +VKG++ + +S
Sbjct: 8 KKVVVFGGTGKTGLHVVQQALDRGHHVTVIARSPEKMTIK-NDNLVVVKGDIFDIESFSP 66
Query: 236 AVEGTDAVVITLGT--RNDLAPTSDLSEGTKNIIDAMRAKNVKTV-------SACLSAFL 388
+ EG DA++ T GT + PT++ SE K I+ M+ V + +
Sbjct: 67 SFEGKDAILSTFGTAFHSIFNPTTEYSESMKGILQTMKKHGVNRLIVETSWGTEATPGGP 126
Query: 389 FYEQEKVPPIFVN-LNEDHKRMFQAL-KDSGLNWIAAFPPHFTDDPSR-----EMIIEVN 547
F + + P+ +N + +D M + K+ G+N+ P T+DP E + N
Sbjct: 127 FSLEWIIKPLLLNGMLKDMGVMEHMIEKEEGINYTIVRPAGLTNDPPNGKYKIEEGVYCN 186
Query: 548 PEKTPGRTIAKCDLGTFLVDALSEPKYYKAVIGICNV 658
T R I + D+ +++ L +Y K I I +
Sbjct: 187 KTGTTHR-IPRADVAACMLNCLDTDQYDKKGIAIATL 222
>SB_43953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +2
Query: 500 PHFTDDPSREMIIEVNPEKTPGRTIAKCDLGTF 598
P FT P I V P +TPG CD+ F
Sbjct: 188 PLFTSQPKHVQNILVRPSRTPGPAFYICDINAF 220
>SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83)
Length = 957
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 428 LNEDHKRMFQALKDSGLNWIAAFPPHFTDDPSREMIIEVNPEKTP 562
+ E ++R+ + LKD G+ F P TD+ E ++EV E+ P
Sbjct: 250 IQEKNERIKKILKDLGIEE-KVFEPTMTDEEVPERLLEVRDEEVP 293
>SB_56714| Best HMM Match : 7tm_3 (HMM E-Value=1.6e-18)
Length = 484
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = +2
Query: 368 ACLSAFLFYEQEKVPPIFVNLNEDHKRMFQALKDSGLNWIAAFPPHFTDD 517
A LS F Y+ K+P N NE +F AL L+WI +P HF D
Sbjct: 333 AGLSTFYAYKARKIPE---NFNEARGIVF-ALYILILSWIVYYPVHFALD 378
>SB_52562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1490
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = -1
Query: 273 PRVMTTASVPSTASCTESGSRTFPLT 196
PR +T+++V S+ S +++GS T PLT
Sbjct: 1342 PRPITSSTVTSSMSSSDAGSSTTPLT 1367
>SB_52454| Best HMM Match : 3HCDH_N (HMM E-Value=1.3)
Length = 114
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 56 KKVVIFGSTGVIGLNAVEAALKKGLEVRAF-VRDP 157
KKVV+ G G G A +KG EV F +R+P
Sbjct: 12 KKVVVTGGAGYFGSRLGYALSEKGAEVTLFDIREP 46
>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
Length = 1290
Score = 27.9 bits (59), Expect = 10.0
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = -1
Query: 276 VPRVMTTASVPSTASCTESG--SRTFPLTISTLSLRCSGSFAGSRTNARTSRPFLSAAST 103
V R + S P+ AS S S P STL+ R G F+G+ + A T A+S
Sbjct: 489 VTRKVAGKSSPANASVIASPEVSSPQPFGTSTLASRVIGPFSGALSGALTKTTLARASSP 548
Query: 102 AFKPI-TPVEPKITTFF 55
P+ V I T F
Sbjct: 549 TPSPMRLGVHTSIDTSF 565
>SB_12316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 676
Score = 27.9 bits (59), Expect = 10.0
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 164 LPEHLKDKVEIVKGNVLEPDSVHEAVEGTDAVVITLG-TRNDLAPTSDLSEGTKNIIDAM 340
L + L D E G + E VH+AVE + G + D+A + E K ID M
Sbjct: 133 LDQELADANEAYVGKIEEFKEVHKAVEQLRTSGFSTGEIKKDIANMEEEHEQLKKRIDRM 192
Query: 341 RAK 349
+ K
Sbjct: 193 QKK 195
>SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1665
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 152 DPAKLPEHLKDKVEIVKGNVLEPDSV 229
DPAK +KD + ++GN+L PD V
Sbjct: 341 DPAKEQPGIKDNDDDIEGNLLLPDGV 366
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,828,257
Number of Sequences: 59808
Number of extensions: 483687
Number of successful extensions: 1361
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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