Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_B22
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 133 2e-32
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 36 0.003
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 33 0.041
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 28 1.2
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 27 2.7
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 27 2.7
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 2.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 3.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 3.5
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom... 25 6.2
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch... 25 8.2
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 133 bits (321), Expect = 2e-32
Identities = 65/153 (42%), Positives = 96/153 (62%), Gaps = 2/153 (1%)
Frame = +2
Query: 125 EYEKAQQRSLNDPEGFWGEVGSEL-EWTKPWDRVLDDS-NAPFTKWWVGGEMSVCYNAVD 298
EY++ + S+NDP FWG + ++ W K + V+ S + + W+ G +S CYN VD
Sbjct: 34 EYKRMYEESINDPSTFWGNMARDMMTWDKQFSTVVQGSIDKADSAWFADGAISPCYNLVD 93
Query: 299 RHVVNGRGEQFALVHDSPLTDTVRKISYNELKDQVSRLAGKLTTLGVSKGARVLIYMPLV 478
RH + R + AL++++ + R I+Y EL VS+ AG L ++GV G RV IYMP++
Sbjct: 94 RHAI-ARPDAVALIYEADEPNQGRYITYRELLASVSQCAGALQSMGVGMGDRVAIYMPMI 152
Query: 479 PEAIIAMLATNRIGAIHSVVFGGFAARELXTRI 577
PE IIAMLA R+GAIHSV+F GF+A + R+
Sbjct: 153 PETIIAMLAIVRLGAIHSVIFAGFSAESVADRV 185
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 36.3 bits (80), Expect = 0.003
Identities = 20/65 (30%), Positives = 36/65 (55%)
Frame = +2
Query: 326 QFALVHDSPLTDTVRKISYNELKDQVSRLAGKLTTLGVSKGARVLIYMPLVPEAIIAMLA 505
+FAL + +R ++Y+EL ++ ++LA L + G G+ + +Y EA I+MLA
Sbjct: 2737 EFALDINQDSVQLIR-LTYSELNERANKLAHNLKSYGFRVGSIIAVYFDKCIEAFISMLA 2795
Query: 506 TNRIG 520
+ G
Sbjct: 2796 ILKAG 2800
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 32.7 bits (71), Expect = 0.041
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 374 ISYNELKDQVSRLAGKLTTLGVSKGARVLIYMP 472
+S+N++ D+ R AG L LG++KG + +Y P
Sbjct: 97 LSFNDIYDKALRYAGALRKLGLNKGDKFELYAP 129
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +3
Query: 51 LVRLKSSLSFLRPTSNAITYVGQRLS 128
++R++SS S+L+ + +A TY+ RLS
Sbjct: 452 IIRIESSASYLKTSFSATTYLRSRLS 477
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 261 THHFVNGALLSSRTRSHGFVHSSSDPTSPQNPSGS 157
+HH V L S +R H +H+ S P S + S
Sbjct: 307 SHHNVRTTLFSDDSRFHSKIHTHSTPPSQMYSAAS 341
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 371 KISYNELKDQVSRLAGKLTTLGVSKGARV 457
K SYN LK Q S L GK++ + + G R+
Sbjct: 69 KNSYNSLKQQHSNLLGKVSGIKSTLGERL 97
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 273 ISPPTHHFVNGALLSSRTRSHGFVHSSSDPTSPQNPSGSFNDLCW 139
I+ P+HH VN S +H++S SPQ+ SF+ W
Sbjct: 8 INKPSHHNVN-----YNGNSFNSIHATSFGMSPQSWGNSFSGQAW 47
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 270 SPPTHHFVNGALLSSRTRSHGFVHSSSDPTSPQNPSGSFND 148
S P N + S+ T S HS P SP +PS ++ D
Sbjct: 280 SQPPRPPTNASTRSTGTSS-SMAHSYDSPPSPSSPSDAYGD 319
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 3.5
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 1/145 (0%)
Frame = -1
Query: 588 SACSILVXNSLAAKPPNTTE*MAPIRLVASIAIIASGTSGM*ISTRAPLLTPNVVSFPAR 409
++ S+ +SLA+ N+T +P + + S + +T + L + ++ S
Sbjct: 81 ASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLA 140
Query: 408 RET*SFSSL*EIFLTVSVSGES*TKANCSPLPLTTCRSTAL*HTDIS-PPTHHFVNGALL 232
+ + SSL T S S T + S P ++ S++L T S T + + L
Sbjct: 141 SSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSL 200
Query: 231 SSRTRSHGFVHSSSDPTSPQNPSGS 157
+S T S SS T+ N + S
Sbjct: 201 NS-TTSATATSSSLSSTAASNSATS 224
>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 541 KYNRVNGADTIGSEHSYNS 485
+Y+ NG T G+ HSY S
Sbjct: 303 RYSHANGVTTSGTTHSYTS 321
>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 8.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 268 RDVGMLQRGGPTRGQWKRRAVRFGSRLA 351
R++G + G P Q K+RA++FGS+ A
Sbjct: 503 RELGR-RLGCPLASQEKKRAIQFGSKAA 529
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,622
Number of Sequences: 5004
Number of extensions: 51804
Number of successful extensions: 141
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -