Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_B20
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo...    46   6e-06
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.44 
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    25   7.2  

>SPAC17H9.11 |||cofilin/tropomyosin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 45.6 bits (103), Expect = 6e-06
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
 Frame = +3

Query: 96  ALILKVNRE-KQXXXXXXXXXXXXXXXXQDILPSHQPRFIVYSYKMEHSDGRTSFPMCFI 272
           A ILKV++  K+                 D L    PRFI+ SY  + +DGR S P+  I
Sbjct: 32  AFILKVDKATKEIVPDGEIMDLQSIEEVADELSETNPRFILVSYPTKTTDGRLSTPLFMI 91

Query: 273 FYTPRDAHMELQVMYAGTQRALAATVGAPRLLEVREIDELTS 398
           ++ P     +L ++YA  +          ++ E R+ +++TS
Sbjct: 92  YWRPSATPNDLSMIYASAKVWFQDVSQVHKVFEARDSEDITS 133


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 159 HSPAPHQLLGLVFLYSPLK*EQNWKCVXGNETFSGLPLQQHQ 34
           HSPA   L    FL+SP+  +  W+   G+   S +P Q HQ
Sbjct: 165 HSPAASNLPIPTFLHSPVSEKAEWQPPTGSVN-SNMPFQFHQ 205


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 269 YILHTQRRTYGAASYVRGHTEGAGGHRRSPETARSP 376
           Y  HT     G  + +       GG R +P+TAR P
Sbjct: 79  YTKHTMFSKVGKKTPMVARFSTVGGERGTPDTARDP 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,319
Number of Sequences: 5004
Number of extensions: 45365
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)