Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_B20
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0140 - 1105005-1105321,1105701-1105776,1106343-1106531           29   2.4  
01_06_1792 - 39912714-39913559                                         29   3.2  
04_04_1587 + 34630678-34632282                                         29   4.3  
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33...    28   5.6  
08_02_0955 + 22994266-22995630                                         28   7.5  
04_03_0197 - 12547382-12547450,12547955-12548231,12549031-12549137     27   9.9  

>03_01_0140 - 1105005-1105321,1105701-1105776,1106343-1106531
          Length = 193

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 344 GRQRPLCARVHNLQLHMCVSGCVEYKTH 261
           GR RPL  +   L++ MC SGC     H
Sbjct: 55  GRSRPLSLQTVELKVRMCCSGCERVVKH 82


>01_06_1792 - 39912714-39913559
          Length = 281

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 296 YGAASYVRGHTEGAGGHRRSPETARSPGDRR 388
           Y  +SY  G   G GG RRS    R  GD++
Sbjct: 9   YDTSSYGAGSGGGGGGGRRSSSPPRGAGDKK 39


>04_04_1587 + 34630678-34632282
          Length = 534

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +2

Query: 320 GHTEGAGGHRRSPETARSPGDRRADLG 400
           GH +GAGG    P T  SP DR A LG
Sbjct: 35  GH-DGAGGDDEPPPTPCSPADRAALLG 60


>01_01_0047 +
           334809-334877,334966-335074,335159-335299,336337-336498,
           336577-336734,337180-337310,337385-337472,337587-337690,
           338346-338444,339060-339116,339262-339337,339519-339602,
           339969-340010,340128-340198,341516-341564,342370-342441,
           343149-343286,343393-343473,344166-344353,344591-345188,
           345274-345342,346729-346854,347048-347175,347986-348142,
           348342-348388,348472-348535,348691-348765,349292-349414,
           349797-349982,351179-351303,351390-351459,351974-352101,
           352585-352726,353065-353163,353239-353285,353598-353652,
           353758-353967,354686-354757,354836-354905,355231-355414,
           355521-355644,355732-355863,356252-356317,356805-356852,
           357572-357676,357728-357865,358097-358399,358482-358594,
           359082-359148,359236-359310,359395-359517,359610-359618,
           360156-360320,360401-360502,361545-361696,361794-361995,
           362079-362126,362215-362298,362613-362657,363302-363385,
           363890-363970,364044-364133,364217-364279,364824-364841,
           365238-365378,365494-365550,366091-366185,366275-366383,
           367067-367156,367308-367387,367480-367558,367742-367903,
           368005-368136,368335-368469,368553-368618,369317-369457,
           369575-369648,369685-369910
          Length = 2905

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -2

Query: 619 SRQKQAGRWYLPNV*ITCNIFCELSKCLXNESSLFQSKT*ILSFRLASSTSACGH 455
           S  KQ  +  LPN+   C++ C L  C    S +F+ K+  L   L   T+A  H
Sbjct: 609 SSNKQFEKVDLPNLVYACSLVCNLIHCSL-LSRVFEEKSSFLQVMLDYVTNAIKH 662


>08_02_0955 + 22994266-22995630
          Length = 454

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 299 GAASYVRGHTEGAGGHRRSPETARSPGDRRADLGMARRET 418
           G+AS       G  G RRSP  +RSP  R A    +R +T
Sbjct: 11  GSASEASDCEAGGAGRRRSPSRSRSP-SRSASPSRSRSKT 49


>04_03_0197 - 12547382-12547450,12547955-12548231,12549031-12549137
          Length = 150

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 338 GGHRRSPETARSPGDRRADLGMARRETEKIIN 433
           GGHR    T RSPG R   +G A+  +   +N
Sbjct: 8   GGHRLPKPTPRSPGGRGEGIGGAQASSSCPLN 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,504,991
Number of Sequences: 37544
Number of extensions: 334979
Number of successful extensions: 926
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)