Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_B20
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024801-11|AAN84814.2|  138|Caenorhabditis elegans Hypothetical...    85   5e-17
L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.       30   1.2  
AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated...    30   1.2  
AL132862-27|CAB60564.1|  682|Caenorhabditis elegans Hypothetical...    29   2.9  
AL034392-4|CAA22307.2|  203|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z81525-3|CAB04258.1|  467|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>AC024801-11|AAN84814.2|  138|Caenorhabditis elegans Hypothetical
           protein Y50D7A.10 protein.
          Length = 138

 Score = 84.6 bits (200), Expect = 5e-17
 Identities = 42/126 (33%), Positives = 66/126 (52%)
 Frame = +3

Query: 15  NVNVCXXXXXXXXXXXXFRFQXHTSNSALILKVNREKQXXXXXXXXXXXXXXXXQDILPS 194
           ++ +C            FRF   T+ +ALILK++RE                  ++ LPS
Sbjct: 4   SLTICSIPDGVKEDLKKFRFSKSTTMNALILKIDRESHELQSEQLLNDCSIEEFKEELPS 63

Query: 195 HQPRFIVYSYKMEHSDGRTSFPMCFIFYTPRDAHMELQVMYAGTQRALAATVGAPRLLEV 374
            QPRFI+ S+  +HSD R S+PM  I+Y P  +  ELQ++YAG++  +       +  E+
Sbjct: 64  QQPRFILLSWCKKHSDERISYPMLLIYYCPNGSSPELQMLYAGSRNFIVNECHVSKNTEI 123

Query: 375 REIDEL 392
           R+IDE+
Sbjct: 124 RDIDEI 129


>L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.
          Length = 152

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +3

Query: 267 FIFYTPRDAHMELQVMYAGTQRALAATVGAPRLLEVR 377
           F+ Y P +A +  +++YA + RAL A++G   L +V+
Sbjct: 94  FVQYCPDNAPVRRRMLYASSVRALKASLGLESLFQVQ 130


>AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated
           protein 60, isoform c protein.
          Length = 152

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +3

Query: 267 FIFYTPRDAHMELQVMYAGTQRALAATVGAPRLLEVR 377
           F+ Y P +A +  +++YA + RAL A++G   L +V+
Sbjct: 94  FVQYCPDNAPVRRRMLYASSVRALKASLGLESLFQVQ 130


>AL132862-27|CAB60564.1|  682|Caenorhabditis elegans Hypothetical
           protein Y73F8A.35 protein.
          Length = 682

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +3

Query: 567 QVIHTL-GRYHRPACFCREAVXCF 635
           Q  H +   YHRP CFCR  +  F
Sbjct: 621 QTAHCIKSEYHRPYCFCRNQINVF 644


>AL034392-4|CAA22307.2|  203|Caenorhabditis elegans Hypothetical
           protein Y40B1A.4 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 269 YILHTQRRTYGAASYVRGHTEGAGGHR 349
           +I H   +TYG  S++R H  G  G++
Sbjct: 107 HICHLCNKTYGKTSHLRAHLRGHAGNK 133


>Z81525-3|CAB04258.1|  467|Caenorhabditis elegans Hypothetical
           protein F33A8.4 protein.
          Length = 467

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +1

Query: 262 CVLYSTHPETHIWSCKLCTRAHRGRWRPPSEPRDCSK 372
           C  Y T    H   C+ CT   +G+W    +   C K
Sbjct: 407 CDRYVTERNVHCDRCQACTSVEQGKWNHCEKCDKCVK 443


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,714,375
Number of Sequences: 27780
Number of extensions: 274844
Number of successful extensions: 679
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)