Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_B19
         (437 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262...    27   5.0  
03_05_0958 - 29200048-29200731                                         27   6.6  
02_05_0715 - 31168831-31169071,31169947-31170064,31170305-31170353     27   8.7  

>07_03_1626 +
           28223967-28225294,28225506-28225779,28225939-28226230,
           28226492-28226651,28226809-28226917,28227004-28227099
          Length = 752

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +1

Query: 115 PSPALCPAGTXXPWRLFINLFRMKLKNSCY----ARSLKPTPPKR 237
           P+ A+  A    P+RLF    R   K S      AR LKP+PP R
Sbjct: 3   PAVAVVAAAAAFPFRLFSAEARRNTKGSRSKRGSARPLKPSPPPR 47


>03_05_0958 - 29200048-29200731
          Length = 227

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 152 GXXVPAGHSAGDGSPFSTPAGCESELGXGHXEASQNKEEKXEFGHFWLSE 3
           G  V AG S+ DG   S+    E+E+       S++K++K +    WL +
Sbjct: 167 GGGVAAGCSSSDGDSKSSDGEKEAEVDGEDGGGSKDKKDKKKKRSSWLPD 216


>02_05_0715 - 31168831-31169071,31169947-31170064,31170305-31170353
          Length = 135

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 44  CFGLLHXGRSPTHFHIQLGWK 106
           CF  L    SPT+ H QL WK
Sbjct: 57  CFQPLKIPASPTNIHYQLRWK 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,916,103
Number of Sequences: 37544
Number of extensions: 163464
Number of successful extensions: 392
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)