Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_B18
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0873 - 32372143-32372287,32372678-32372754,32372863-323730... 47 2e-05
03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312 45 8e-05
09_04_0359 + 16941904-16942110,16943636-16943785,16944084-169442... 42 4e-04
07_03_1385 + 26189034-26189294,26189427-26189636,26191016-261910... 33 0.25
01_01_0556 + 4090432-4090500,4091414-4092030,4092408-4092533,409... 31 1.00
10_07_0126 - 13143485-13144117,13144204-13145238 28 7.0
03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465... 28 7.0
01_01_0145 + 1327172-1327362,1327491-1328169 28 7.0
>02_05_0873 -
32372143-32372287,32372678-32372754,32372863-32373072,
32374645-32374869
Length = 218
Score = 46.8 bits (106), Expect = 2e-05
Identities = 34/181 (18%), Positives = 74/181 (40%), Gaps = 5/181 (2%)
Frame = +2
Query: 167 ELPDSAEXCFYQTMDKDTAASLEYQVI----SGGQYDVSVKIEAPNRQIIYQQEKMQYDS 334
+LP S C + + + +Y ++ ++VK+ +P ++ E
Sbjct: 35 DLPQSGTKCVSEEIQSNVVVLADYALMYESHPSSHPTIAVKVTSPYGNTLHHNENATVGQ 94
Query: 335 HQFTALASGDYKVCFSNEFSTFSHKL-VYMELNVGPEQPLPGVGDHATVLTQLETSAEEI 511
FT +G+Y CF + + + + ++ +G V + +E ++
Sbjct: 95 FAFTTSEAGNYLACFWIDSAEKGSGISINLDWKIGIAAKDWDVIAKKEKIEGVELELRKL 154
Query: 512 HSALNRIIDHQTHHRLREAQGRKRAEDLNEKVFWWSMGETLAIVCVAFTQVMILKNFFSD 691
A+ I + + + REA+ R +E N +V W+S+ + V+ Q+ L+ +F
Sbjct: 155 EVAVQSIHQNMIYLKAREAEMRTVSEKTNARVAWFSILSLSVCIVVSILQLWHLQGYFQK 214
Query: 692 K 694
K
Sbjct: 215 K 215
>03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312
Length = 232
Score = 44.8 bits (101), Expect = 8e-05
Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 2/164 (1%)
Frame = +2
Query: 218 TAASLEYQVISGGQYDVSVKIEAPNRQIIYQQEKMQYDSHQFTALASGDYKVCF--SNEF 391
+++S Q + + VS+++ +P ++ E +Q + FTA +GDY CF +
Sbjct: 70 SSSSSSAQPLLPESHRVSLRVTSPYGNSLHYSENVQSGNFAFTASEAGDYLACFWAPDHR 129
Query: 392 STFSHKLVYMELNVGPEQPLPGVGDHATVLTQLETSAEEIHSALNRIIDHQTHHRLREAQ 571
T + + + + V V +E +++ +N I + + R RE +
Sbjct: 130 PTATVGFEFDWRSGVSARDWTNVAKKGQV-DMMEVELKKLEDTINSIHEEMFYLRAREEE 188
Query: 572 GRKRAEDLNEKVFWWSMGETLAIVCVAFTQVMILKNFFSDKPTL 703
++ N ++ W + VA Q+ LKNFF K L
Sbjct: 189 MQELNRRTNSRMAWLGFFSLAICLSVAGLQLWHLKNFFERKKLL 232
>09_04_0359 +
16941904-16942110,16943636-16943785,16944084-16944293,
16944376-16944452,16944554-16944698
Length = 262
Score = 42.3 bits (95), Expect = 4e-04
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 12/158 (7%)
Frame = +2
Query: 257 QYDVSVKIEAPNRQIIYQQEKMQYDSHQFTALASGDYKVCFSNEFSTFSHKLVYMEL--- 427
++ K+ +P I++ ++K+ FT +G+Y CFS + +V + L
Sbjct: 113 RFGTPAKVTSPFGDIVHHKQKVSTGQFSFTTAEAGNYLACFSAD-GRNKRLVVKLNLDWR 171
Query: 428 ---------NVGPEQPLPGVGDHATVLTQLETSAEEIHSALNRIIDHQTHHRLREAQGRK 580
+V ++ L GV L +LETS + IH L + R +EA R
Sbjct: 172 VGIATKDWDSVAKKEKLEGV---ELELVKLETSVQAIHENLLLL-------RSKEANMRD 221
Query: 581 RAEDLNEKVFWWSMGETLAIVCVAFTQVMILKNFFSDK 694
+E N + W S+ + + V+ Q+ L+ +F K
Sbjct: 222 TSEKTNARATWLSIISLIVCIIVSVLQLWHLQQYFRKK 259
>07_03_1385 +
26189034-26189294,26189427-26189636,26191016-26191092,
26191196-26191340
Length = 230
Score = 33.1 bits (72), Expect = 0.25
Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 2/148 (1%)
Frame = +2
Query: 266 VSVKIEAPNRQIIYQQEKMQYDSHQFTALASGDYKVCF--SNEFSTFSHKLVYMELNVGP 439
+S+++ +P ++ E + + FTA +GDY CF + S + +
Sbjct: 84 ISLRVTSPYGNSVHYAENVPSGNFAFTATEAGDYLACFWAPDHKPPVSIGFEFDWRSGVA 143
Query: 440 EQPLPGVGDHATVLTQLETSAEEIHSALNRIIDHQTHHRLREAQGRKRAEDLNEKVFWWS 619
+ V V +E +++ + I + + R RE + + + N ++ W
Sbjct: 144 AKDWSNVAKKGQV-DVMEMELKKLEETIKSIHEEMFYLREREEEMQNLNKQTNSRMAWLG 202
Query: 620 MGETLAIVCVAFTQVMILKNFFSDKPTL 703
+ VA Q+ LK FF K L
Sbjct: 203 FLSLGICLSVAGLQLWHLKTFFERKKLL 230
>01_01_0556 +
4090432-4090500,4091414-4092030,4092408-4092533,
4092619-4092895,4093021-4093251
Length = 439
Score = 31.1 bits (67), Expect = 1.00
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 208 GQGYGCFIGVPSNFWRTV*RKRKNRSS*QTNYISARED 321
G GC +P +WR + R R+N TN +S+ D
Sbjct: 158 GYTIGCVATLPHLYWRFLHRNRQNTEQESTNQVSSERD 195
>10_07_0126 - 13143485-13144117,13144204-13145238
Length = 555
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 551 HRLREAQGRKRAEDLNEKVFWWSMGETLAIV--CVAFTQVMILKNFFSDKP 697
HR +A R A ++ +S+GET A+V C A + ++ F+D+P
Sbjct: 95 HRALDAMSRDAAAPRARELMAFSVGETPAVVSSCPATAREVLAHPSFADRP 145
>03_02_0913 +
12344096-12344125,12344284-12345970,12346243-12346573,
12346712-12347567,12347760-12347883,12348469-12348688,
12348771-12349229,12349318-12349519
Length = 1302
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 242 VISGGQYDVSVKIEAPNRQIIYQQEKMQYDSHQ 340
+IS G Y +K E PNR I M+ +SH+
Sbjct: 317 MISDGSYSGLIKCEQPNRNIYEFTATMELNSHR 349
>01_01_0145 + 1327172-1327362,1327491-1328169
Length = 289
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +1
Query: 421 GTKCWTGAASSWCRRSC-NCSYTVGDI-CR 504
GT AASSW R+C +C+ +GDI CR
Sbjct: 68 GTPRAAPAASSWMDRACPSCNEPIGDIRCR 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,344,578
Number of Sequences: 37544
Number of extensions: 328553
Number of successful extensions: 819
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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