Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_B17
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817           30   1.8  
11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767           30   2.4  
11_01_0616 - 4933787-4934533,4935590-4935680,4935719-4936203           29   4.1  
01_01_0786 - 6094135-6094310,6094458-6094584,6094698-6094788,609...    29   4.1  
12_02_0439 + 19096711-19096713,19096819-19096893,19097037-190971...    29   5.4  
11_01_0615 + 4916377-4916739,4917301-4918086                           28   7.2  
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159...    28   7.2  
06_01_0607 - 4390830-4391510,4391712-4391882,4391970-4392086,439...    28   9.5  

>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
          Length = 883

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -2

Query: 284 VFQFHFQLGHHRPLLDGNYMFSPNNCTPEVL*PP 183
           V Q H  L H RPLL  +   +P+ C P VL PP
Sbjct: 251 VEQAHHLLCHVRPLLLLHCTLAPHLCVPRVLSPP 284


>11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767
          Length = 355

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 253 IAHFSMGITCFLRITVLLRFCDLLTKLVYFTIFNTPACXHXCXI 122
           + H  MGI    RI V +    L + L++  IF  P C   C +
Sbjct: 273 VLHKRMGIMVLARIGVPMAVVLLQSSLIFVVIFGAPLCPPLCLL 316


>11_01_0616 - 4933787-4934533,4935590-4935680,4935719-4936203
          Length = 440

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 238 MGITCFLRITVLLRFCDLLTKLVYFTIFNTPACXHXCXI 122
           MGI   LRI   +    L++ +VY  IF  P C   C +
Sbjct: 382 MGIRVVLRIGAPIGIDLLISNIVYLIIFGAPFCTPLCVL 420


>01_01_0786 -
           6094135-6094310,6094458-6094584,6094698-6094788,
           6094875-6095455
          Length = 324

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 24/115 (20%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
 Frame = +2

Query: 170 NKLRKEVTEPQEYSYSEKTCNSHREVGDGAPAENETEKPELMLTNKMNHSPSRI----YL 337
           N +  E  +  E   ++  C+        +PA  + ++ + +L N+ +   SR+    Y+
Sbjct: 154 NSMNDEKQDKGETDEAQSECDGATPGQPASPATVDPKRVKRILANRQSAQRSRVRKLQYI 213

Query: 338 -QLKIDVIAIGLLILALCTRLYKLDEPRHIV-FDELHYGRYVSLYTKGVFFFDAH 496
            +L+  V ++   + AL  R+  LD  R ++     H  + ++   +   F DAH
Sbjct: 214 SELERSVTSLQTEVSALSPRVAFLDHQRSLLTLGNSHLKQRIAALAQDKIFKDAH 268


>12_02_0439 +
           19096711-19096713,19096819-19096893,19097037-19097111,
           19097225-19097297,19097536-19097580,19098217-19098328,
           19098794-19098866,19099178-19099222,19100216-19100271,
           19100370-19100545,19101289-19101476
          Length = 306

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 152 VKNRKINKLRKEVTEPQEYSYSEKTCNSHREVGDGAPAENETEKPELMLT 301
           +KN ++   R+E T     +Y E    +  E+ DGAP   E+    L LT
Sbjct: 206 IKNMELEVRRRESTGAGSSAYVETETLAKFELMDGAPVRGESIPVRLFLT 255


>11_01_0615 + 4916377-4916739,4917301-4918086
          Length = 382

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 238 MGITCFLRITVLLRFCDLLTKLVYFTIFNTPACXHXCXI 122
           MGIT   +I V +    + + LVY  IF  P C   C +
Sbjct: 325 MGITVLAKIGVPITVDLVKSNLVYLVIFGGPLCTPLCVL 363


>07_01_0214 +
           1595917-1596526,1597127-1597140,1598414-1598743,
           1598853-1598963,1599113-1599269,1603366-1603619,
           1603762-1603960,1604341-1604498
          Length = 610

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 636 PDTAGTSLRAFTGTLSVYGVPIRSKVKFPSYPAILP 529
           P ++G++L+   G  +    P+  +  F S+PA+LP
Sbjct: 22  PSSSGSTLQKLVGPAAPSLAPLTLRAAFVSFPALLP 57


>06_01_0607 -
           4390830-4391510,4391712-4391882,4391970-4392086,
           4392314-4392573,4393346-4393760
          Length = 547

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 587 TDNVPVKALRLVP--AVSGSFLVLITYFLMLELSLHQWTAILAALLVLL 727
           TD +P+   R  P   ++G F+ ++    ML LSLH    +L ALL L+
Sbjct: 120 TDVLPIAGYRRRPYFVIAGGFMGVVA---MLVLSLHSKLHVLFALLALM 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,643,633
Number of Sequences: 37544
Number of extensions: 378320
Number of successful extensions: 798
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)