Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_B17
(777 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 33 0.30
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 33 0.30
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 33 0.30
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ... 31 1.2
AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical ... 29 2.8
U50311-12|AAA92315.1| 169|Caenorhabditis elegans Hypothetical p... 29 4.9
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 28 8.6
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 28 8.6
AL110500-13|CAB54495.1| 791|Caenorhabditis elegans Hypothetical... 28 8.6
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 152 VKNRKINKLRKEVTEPQEYSYSEKTCNSHREVGDGAPAENETEK 283
V + K+ K+ TE + S S+K+ S V G P+E+ET+K
Sbjct: 9759 VDEKPKKKVLKKKTEKSDSSISQKSVTSKTVVESGGPSESETQK 9802
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 152 VKNRKINKLRKEVTEPQEYSYSEKTCNSHREVGDGAPAENETEK 283
V + K+ K+ TE + S S+K+ S V G P+E+ET+K
Sbjct: 9779 VDEKPKKKVLKKKTEKSDSSISQKSVTSKTVVESGGPSESETQK 9822
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 152 VKNRKINKLRKEVTEPQEYSYSEKTCNSHREVGDGAPAENETEK 283
V + K+ K+ TE + S S+K+ S V P+E+ET+K
Sbjct: 13412 VDEKPKKKVLKKKTEKSDSSISQKSETSKTVVESAGPSESETQK 13455
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 152 VKNRKINKLRKEVTEPQEYSYSEKTCNSHREVGDGAPAENETEK 283
V + K+ K+ TE + S S+K+ S V G P+E+ET+K
Sbjct: 9779 VDEKPKKKVLKKKTEKSDSSISQKSVTSKTVVESGGPSESETQK 9822
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 152 VKNRKINKLRKEVTEPQEYSYSEKTCNSHREVGDGAPAENETEK 283
V + K+ K+ TE + S S+K+ S V P+E+ET+K
Sbjct: 13412 VDEKPKKKVLKKKTEKSDSSISQKSETSKTVVESAGPSESETQK 13455
>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
protein Y81G3A.3 protein.
Length = 1696
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 179 RKEVTEPQEYSYSEKTCNSHREVGDGAPAENETEKPELMLTNK 307
R E E Y +TC R GDG + + EKP + NK
Sbjct: 1309 RTEAIEQISIVYDSQTCYRPRTFGDGLLFQIQVEKPSTIANNK 1351
>AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical
protein R06B10.1 protein.
Length = 1236
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -1
Query: 762 NMNLDCXK-KQFSRSTNKAASMAVH*CKDSSSIKKYVIKTRKLPDTAGTSLRAFTGTLSV 586
NM LD K + K S KD ++K+ + +L +T TSL F GT+ V
Sbjct: 657 NMKLDVNDLKSLCSTVQKEMSKVTLDAKDQQNLKRLATLSAEL-ETMATSLNKFMGTVKV 715
Query: 585 YGVP 574
P
Sbjct: 716 SNSP 719
>U50311-12|AAA92315.1| 169|Caenorhabditis elegans Hypothetical
protein C25E10.10 protein.
Length = 169
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 140 TGRCVKNRKINKLRKEVTEPQEYSYSEKTCNSHR-EVGDGAPAENETE 280
TG+CV+ K +K E +E ++ E TC ++ D A++ TE
Sbjct: 122 TGKCVEKNKCSKCTLECSENEKCELVELTCEEKPCQIVDVCVAQHTTE 169
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -2
Query: 389 CIMPILEVLLRLHQS*AVNICVKENDSFCSSALILVFQFHFQLGHHRPLLDGNYMF 222
C+ PIL+VL+ ++ K ++S C S L + +L H+ LL NY+F
Sbjct: 112 CLPPILKVLVEWYE--------KYDESLCLSMLSPIATPELRLKLHKKLLAVNYLF 159
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -2
Query: 389 CIMPILEVLLRLHQS*AVNICVKENDSFCSSALILVFQFHFQLGHHRPLLDGNYMF 222
C+ PIL+VL+ ++ K ++S C S L + +L H+ LL NY+F
Sbjct: 112 CLPPILKVLVEWYE--------KYDESLCLSMLSPIATPELRLKLHKKLLAVNYLF 159
>AL110500-13|CAB54495.1| 791|Caenorhabditis elegans Hypothetical
protein Y87G2A.12 protein.
Length = 791
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +2
Query: 194 EPQEYSYSEKTCNSHREVGDGAPAENETEKPELMLTNKMNHSPSRIYLQLK 346
+ + + YS C S + V N + E+ ++K NH P R+ L+
Sbjct: 402 DAEAHQYSTYNCESLQPVFKNPVTGNHVQLEEIHHSSKANHHPQRVQHHLQ 452
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,801,801
Number of Sequences: 27780
Number of extensions: 358742
Number of successful extensions: 953
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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