Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_B17
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   1.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    24   1.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.5  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +2

Query: 488 DAHPPLGKQLLYLAGSIAGY-DGNFTFDRIGTPYTDNVPVKALRLVPAVSGSFLVLITY 661
           DA+PPL   +L   GSI  Y    + F    +   D   + A  LV  + GS LV   Y
Sbjct: 328 DAYPPLAAIVLGAIGSIVFYIISRYVF---RSALEDYCNIVATHLVCGILGSILVPFFY 383


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 299 SALILVFQFHFQLGHH 252
           S L++ F+F  Q+GHH
Sbjct: 187 SRLVVFFRFERQIGHH 202


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -1

Query: 603 TGTLSVYGVPIRSKVKFPS-YP 541
           T  +S YG PI S   FPS YP
Sbjct: 376 TERISPYGYPIGSGGSFPSLYP 397


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 518 LYLAGSIAGYDGNFTF 565
           LYL  ++ G+ GN TF
Sbjct: 871 LYLQNNLIGFIGNLTF 886


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,943
Number of Sequences: 438
Number of extensions: 4037
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)