Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_B16
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0784 - 5868545-5868888,5868990-5869085,5870313-5870394,587... 67 1e-11
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306... 42 3e-04
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 38 0.006
01_06_1796 - 39932487-39932633,39933150-39933201,39933370-399334... 32 0.39
12_02_0454 + 19199063-19200757,19202201-19202287 30 1.2
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 29 2.1
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 29 2.1
03_06_0561 + 34728428-34728439,34728529-34728615,34728729-347287... 29 3.6
08_02_0260 + 14990324-14990916,14991055-14991245,14997427-149974... 28 4.8
05_06_0202 - 26339467-26339494,26339579-26339624,26339742-263397... 28 4.8
>06_01_0784 -
5868545-5868888,5868990-5869085,5870313-5870394,
5870639-5870839,5871810-5871818
Length = 243
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/83 (36%), Positives = 45/83 (54%)
Frame = +2
Query: 5 MXEYWKSQARKYCEFCKCWFADNKVSTSFHENGKKHKDKVQEHISKLSKKSAKDFXXXXX 184
M EYW SQ K+C+FCK + A+N +S HE GK+HKD V + ++ + K+ A
Sbjct: 1 MTEYWVSQGNKWCDFCKIYIANNPLSIRTHEIGKRHKDNVTKRLATMQKEGAAKEKEQQQ 60
Query: 185 XXXXXXXXXAAAMTAYIKDVQNN 253
A A +Y KD++N+
Sbjct: 61 AARALKQIEAKAKKSYQKDLENS 83
>06_02_0046 +
10928708-10928798,10929997-10930077,10930567-10930685,
10931275-10931894,10931992-10933184,10933280-10933359,
10933751-10933846,10933931-10934004,10936007-10936151,
10936323-10936487
Length = 887
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +2
Query: 326 VASEIGTKSEPIWHEVKNQDGSSYYWNTITSETTWEQPD 442
+ +IG + I HE NQ YYWNT+T ET+WE P+
Sbjct: 169 IVGDIGGNWKTIMHEQSNQ---CYYWNTVTGETSWEIPN 204
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +2
Query: 242 VQNNADLTSQNINQMLGGDGSNKSNPKIVASEIGTKSEPIWHEVKNQDGSSYYWNTITSE 421
VQ+ QN+ + G S+ + + S W E + DG YY+N T +
Sbjct: 71 VQSWGTAPGQNVPLVQPGHQPMSSSATMPSINSSETSSSDWQEHTSADGKKYYYNKKTRQ 130
Query: 422 TTWEQPDE 445
++WE+P E
Sbjct: 131 SSWEKPAE 138
Score = 36.7 bits (81), Expect = 0.014
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 362 WHEVKNQDGSSYYWNTITSETTWEQPDE 445
W E Q+G YY+N +T ++ W PDE
Sbjct: 152 WKEFTTQEGRKYYYNKVTKQSKWTIPDE 179
>01_06_1796 -
39932487-39932633,39933150-39933201,39933370-39933495,
39933645-39933743,39934039-39934258,39934599-39934764,
39935108-39935161,39935527-39935657,39935747-39935818,
39936524-39936602,39936705-39936783,39936868-39936902,
39936986-39937111
Length = 461
Score = 31.9 bits (69), Expect = 0.39
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 362 WHEVKNQD-GSSYYWNTITSETTWEQP 439
W E +Q G YY+NT T T WE P
Sbjct: 239 WEEALDQSTGQKYYYNTNTQATQWEPP 265
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 356 PIWHEVKNQ-DGSSYYWNTITSETTWEQP 439
P W E K+ G+SY++N T T W++P
Sbjct: 190 PGWVEAKDPTSGASYFYNQSTGTTQWDRP 218
>12_02_0454 + 19199063-19200757,19202201-19202287
Length = 593
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 20 KSQARKYCEFCKCWFADNKVSTSFHENGKKHKDKVQE 130
K + YC C F +K + HE KKH+DKV E
Sbjct: 305 KRKEELYCVACNKKFKSDKQWKN-HEQSKKHRDKVSE 340
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +2
Query: 383 DGSS-YYWNTITSETTWEQP 439
DGS+ YYWN T+ET +E+P
Sbjct: 31 DGSTLYYWNPDTNETQYERP 50
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = +2
Query: 212 AAAMTAYIKDVQNNADLTSQNINQMLGGDGSNKSNP---KIVASEIGTKSEPIWHEVKNQ 382
++++TAY+ +Q T+ ++ L P ++ GT W V
Sbjct: 445 SSSVTAYLPSIQPPGVSTTDRDSKELSSANPGSEQPTRFRLRDKLAGTD----WSIVTTS 500
Query: 383 DGSSYYWNTITSETTWEQPDEYFSIV 460
DG YY++ ++W+ P E ++
Sbjct: 501 DGKKYYYDNKLKVSSWQLPPEVAELI 526
>03_06_0561 +
34728428-34728439,34728529-34728615,34728729-34728750,
34728843-34728925,34729139-34729171,34729468-34729546,
34729642-34729694,34729931-34729991,34730168-34730250,
34730418-34730513
Length = 202
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 26 QARKYCEFCKCWFADNKVSTSFHENGKKHK 115
QA YC+ C+C D+ + H NGKKH+
Sbjct: 79 QAGYYCKVCECVVKDS-ANYLDHINGKKHQ 107
>08_02_0260 +
14990324-14990916,14991055-14991245,14997427-14997495,
14998134-14999221
Length = 646
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 314 NPKIVASEIGTKSEPIWHEVKNQDGSSYYWNTITSETTWEQP 439
+P+ V E T S P+W D NT+TS+ T P
Sbjct: 143 SPRTVGVEFDTFSNPMWDPEGTVDHVGIDVNTVTSKNTTAMP 184
>05_06_0202 -
26339467-26339494,26339579-26339624,26339742-26339785,
26340729-26340851,26341010-26341124,26341447-26342207,
26342305-26342711,26342798-26342900,26344642-26345144
Length = 709
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 248 NNADLTSQNINQMLGGDGSNKSNPKIVASEIGTKSEPIW 364
NN D + + G SNKS P++V + +P W
Sbjct: 287 NNFDFVRKESRPLYGNAKSNKSAPRVVRGRGSKRYQPHW 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,190,448
Number of Sequences: 37544
Number of extensions: 208673
Number of successful extensions: 692
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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