Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_B15
         (738 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    29   0.15 
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    23   9.8  

>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 29.1 bits (62), Expect = 0.15
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
 Frame = -1

Query: 159 PRPVPKATMGRGXPACS----WMQGACTAIAACNKRVKVMXSKQTGQIAVPV 16
           P   P+A   R   A S    WM+  C  +A     +  + SK+ G I VPV
Sbjct: 687 PGITPEAASQRAEEAVSAVNLWMENHCLELAPAKTELVTISSKRQGNINVPV 738



 Score = 25.0 bits (52), Expect = 2.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 527 AAARPACLARFPDSRCYQENRQA 459
           A+  P CL    D+RCYQ  ++A
Sbjct: 855 ASMIPICLLVQEDARCYQRQQEA 877


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 693 WRTVRSGSWCRVVXP 737
           W T  SGSW R + P
Sbjct: 863 WSTTTSGSWTRRLIP 877


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 779,776
Number of Sequences: 2352
Number of extensions: 16357
Number of successful extensions: 24
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 75676146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)