Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_B13
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...   141   9e-35
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    93   4e-20
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    77   3e-15
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    26   5.3  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    26   7.0  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     25   9.3  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   9.3  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score =  141 bits (342), Expect = 9e-35
 Identities = 62/91 (68%), Positives = 74/91 (81%)
 Frame = +3

Query: 132 PKSGQPVVVHYTGTLTHGKKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLT 311
           PK G  + +HYTGTLT+GKKFDSS DRG PF   IG  ++IRGWDEGV KMS+GE+AKLT
Sbjct: 17  PKPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLT 76

Query: 312 CSPDYAYGQQGHPGVIPPNSTLIFDVELLRL 404
            +PDY YG +G PG+IPPNSTL+FDVELL +
Sbjct: 77  ITPDYGYGPRGFPGLIPPNSTLLFDVELLAI 107


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 93.1 bits (221), Expect = 4e-20
 Identities = 47/99 (47%), Positives = 63/99 (63%)
 Frame = +3

Query: 108 VQVAASXSPKSGQPVVVHYTGTLTHGKKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMS 287
           V+  +  S  +G+ V + Y G L +GK FD +  +GKPF F +G+ EVIRGWD GVA M 
Sbjct: 264 VKTGSGASATNGKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWDVGVAGMQ 322

Query: 288 VGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRL 404
            G   K+T     AYG Q  PG IP NSTL+F+V+L+R+
Sbjct: 323 EGGERKITIPAPMAYGNQSIPG-IPKNSTLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 77.0 bits (181), Expect = 3e-15
 Identities = 41/88 (46%), Positives = 52/88 (59%)
 Frame = +3

Query: 135 KSGQPVVVHYTGTLTHGKKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTC 314
           K  + V + Y G LT+GK FD +   GKPF F +G  EVI+GWD G+  M VG    +  
Sbjct: 274 KRKKRVSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHI 332

Query: 315 SPDYAYGQQGHPGVIPPNSTLIFDVELL 398
               AYG +  PG IP NS L+FDV+LL
Sbjct: 333 PAAMAYGSKRLPG-IPANSDLVFDVKLL 359


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 670 TFLKSILSL*FHHNTYLHLRDNCIYIY 750
           TFLK I     H   Y + +DNCIY+Y
Sbjct: 255 TFLKGISRRSGHQMVY-NPKDNCIYLY 280


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 525 YTNIVYL*WKYIYIYAIRKNFIL*VNKFMVRLINEIL 635
           +  I+Y  W  +  + I   + L V KF+V+L+++I+
Sbjct: 3   FATILYSIWVVLSSFVILSAYQLEVRKFLVKLLSKIV 39


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = -3

Query: 210 GHAMSQTFYRA*VFQCNEQLQAGLIWGRXTRRPGLRVATXTPMID 76
           GH+  + F          Q +   +WG+    PG+RV     ++D
Sbjct: 313 GHSTVEDFCNNIHSSIKSQFKHAYVWGKSVPYPGMRVGLSHVLLD 357


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 322 SGEQVNLARSPTDIFATPSSQPRITSDFPILNLKGLPRSRDESN 191
           +G   NLAR P+D+   P +    +S      L  LP+   E N
Sbjct: 216 AGSVPNLARIPSDVKPVPPAHLSASSTVGPRILPSLPKDTTEDN 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,209
Number of Sequences: 5004
Number of extensions: 59720
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)