Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_B11
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    28   1.3  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   3.1  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    27   4.1  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   9.5  

>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +3

Query: 216 DIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIP 395
           D G+E +E NRR  +  +FS     S ++S     H TL    D  +  V++  + G +P
Sbjct: 494 DSGIEASESNRR--KSDIFSFSGRNSFSVSRPSSSHSTLSYANDSASSAVNVAGETGSLP 551

Query: 396 GIK 404
            ++
Sbjct: 552 PLR 554


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +3

Query: 273 SSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECT 452
           S +A    NI GV+    +  ++  + + L +L EK G    I          GSE   +
Sbjct: 349 SYNASFLVNIVGVVATLSSSSEENSEASNLSTLFEKSGNFEEI---------LGSESHSS 399

Query: 453 -TQGLDDLAQRCAQYKKDGCHFAKW 524
            T+   D+A+  A + K+G +F+ W
Sbjct: 400 ITEKTRDIAKNVATWLKNGENFSSW 424


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = +3

Query: 579 NANVLARYASICQSQRIVPIVEPEVLPDGEHDLXRAXKVTEVVLAAVYKALNDHHVYLEG 758
           N+N LA+   + + ++++P+  P+  PD   ++    + T    ++      D     E 
Sbjct: 325 NSNFLAKSTPLPEQEQLIPLEIPKDEPDSVDEINEENEETPEYDSSNSSYAQDSSTIPEK 384

Query: 759 TLLK 770
           TLLK
Sbjct: 385 TLLK 388


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +3

Query: 372 LEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQ 479
           L+K+G++P   V++       +ED+ +T+G++ L +
Sbjct: 703 LKKQGVLPLTFVNEADYEKIDAEDKVSTRGIEQLLE 738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,176,740
Number of Sequences: 5004
Number of extensions: 65915
Number of successful extensions: 179
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)