Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_B10
(542 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal pro... 109 1e-24
U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal prote... 106 1e-23
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 29 2.9
U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical pr... 29 2.9
AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical ... 29 2.9
AF036704-5|AAB88558.2| 360|Caenorhabditis elegans Hypothetical ... 28 5.0
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 27 6.6
Z81030-5|CAB02709.1| 324|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 27 8.7
>AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal
protein, acidic protein 1 protein.
Length = 111
Score = 109 bits (263), Expect = 1e-24
Identities = 57/112 (50%), Positives = 69/112 (61%)
Frame = +2
Query: 86 MVSKAELACVYSALILVDXDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 265
M S ELACVY+ALIL D +VA+TGEKI+T+LKAA V+ EPYWPGLFAKALEG++V++LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60
Query: 266 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 421
T++ SG SDDDMGFGLFD
Sbjct: 61 TSVSSGA-GSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111
>U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal protein
P1 homolog protein.
Length = 111
Score = 106 bits (254), Expect = 1e-23
Identities = 56/112 (50%), Positives = 68/112 (60%)
Frame = +2
Query: 86 MVSKAELACVYSALILVDXDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 265
M S ELACVY+ALIL D +VA+TGEKI+T+LKAA V+ EP WPGLFAKALEG++V++LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60
Query: 266 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 421
T++ SG SDDDMGFGLFD
Sbjct: 61 TSVSSGA-GSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 389 SDDDMGFGLFD 421
SDDDMGFGLFD
Sbjct: 302 SDDDMGFGLFD 312
>U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical
protein C37A2.7 protein.
Length = 107
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 389 SDDDMGFGLFD 421
SDDDMGFGLFD
Sbjct: 97 SDDDMGFGLFD 107
>AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical
protein Y62E10A.1 protein.
Length = 110
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 389 SDDDMGFGLFD 421
SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110
>AF036704-5|AAB88558.2| 360|Caenorhabditis elegans Hypothetical
protein ZK185.1 protein.
Length = 360
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 108 ANSAFDTIFSFERASCRRPXLKREQARLSXDNK 10
A++++ IFSF + R +KRE AR S + +
Sbjct: 190 ASTSYTIIFSFHKVDKARRRIKREMARKSLERR 222
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/56 (26%), Positives = 22/56 (39%)
Frame = +1
Query: 76 KTKNGVKS*ISMCLLCSHPGGX*CCRNW*ENFHHLESGGCRCRAILARSVRQSLGR 243
K N S S+C +C+H G W E + GC CR ++ + R
Sbjct: 5007 KDYNESFSQFSICNICNHGGHVNHIATWFETEKYCPVAGCDCRCQRSKQTKHLKAR 5062
>Z81030-5|CAB02709.1| 324|Caenorhabditis elegans Hypothetical
protein C01G10.7 protein.
Length = 324
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 2 HCSLLSXLKRACSLLSX-GLRQLARSKLKMVSKAELACVYSALILVDXDVAVTGEKISTI 178
H S + ++ A + L + S KM+ K + S ++ ++ VA+T + + +
Sbjct: 9 HISQFAGVRDAAKYVPRRALLYVPASNQKMLDKVPMMQADSVVLELEDGVALTAKADARV 68
Query: 179 LKAAAVDVEPY 211
AAA+D PY
Sbjct: 69 RAAAALDKLPY 79
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 189 AAFKMVEIFSPVTATSXSTRMRAE*THANSAFDTIFS 79
A M EIFSPV++T+ R + S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 189 AAFKMVEIFSPVTATSXSTRMRAE*THANSAFDTIFS 79
A M EIFSPV++T+ R + S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,888,358
Number of Sequences: 27780
Number of extensions: 147700
Number of successful extensions: 323
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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