Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_B09
(814 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 181 7e-46
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 173 1e-43
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 165 5e-41
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 145 4e-40
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 54 1e-07
02_05_0250 + 27153048-27154453,27154546-27154885 31 0.82
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 31 1.4
02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915 29 3.3
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 29 4.4
08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695 29 4.4
11_06_0437 - 23533218-23536382 29 5.8
05_01_0297 - 2314687-2316021 29 5.8
03_05_1012 + 29670310-29670512,29670856-29671001,29671169-296712... 28 7.7
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 181 bits (440), Expect = 7e-46
Identities = 78/137 (56%), Positives = 108/137 (78%), Gaps = 2/137 (1%)
Frame = +3
Query: 111 TFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPST 290
T+P Q +RKNG++++K RPCK+VE+STSKTGKHGHAK H VGIDIFNGKK EDI PS+
Sbjct: 20 TYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS 79
Query: 291 HNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRTDF-DSGKEL 464
HN DVPHV R DYQL DIS+DG+++L+ ++G+ ++DL++P D L Q++ F + GK++
Sbjct: 80 HNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDDTLTNQIKNGFGEEGKDM 139
Query: 465 LCTVLKSCGEECVIAVK 515
+ TV+ + GEE + AVK
Sbjct: 140 ILTVMSAMGEEQICAVK 156
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 173 bits (422), Expect = 1e-43
Identities = 77/140 (55%), Positives = 107/140 (76%), Gaps = 5/140 (3%)
Frame = +3
Query: 111 TFPMQCSALRKNGFVMLKGRPCK----IVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDI 278
T+P Q +RKNG++++K RPCK +VE+STSKTGKHGHAK H V IDIFNGKK EDI
Sbjct: 33 TYPQQAGTIRKNGYIVIKNRPCKGFGKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDI 92
Query: 279 CPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRTDFDSG 455
PS+HN DVPHV R +YQL DIS+DG+++L+ ++G+ ++DL++P D L Q++T F G
Sbjct: 93 VPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPTDDSLLGQIKTGFGEG 152
Query: 456 KELLCTVLKSCGEECVIAVK 515
K+L+ TV+ + GEE + A+K
Sbjct: 153 KDLVVTVMSAMGEEQICALK 172
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 165 bits (400), Expect = 5e-41
Identities = 78/149 (52%), Positives = 105/149 (70%), Gaps = 14/149 (9%)
Frame = +3
Query: 111 TFPMQCSALRKNGFVMLKGRPCK-------------IVEMSTSKTGKHGHAKVHLVGIDI 251
T+P Q +RKNG +++K RPCK +VE+STSKTGKHGHAK H V IDI
Sbjct: 1342 TYPQQAGTIRKNGHIVIKNRPCKWSGNHASLLVDTKVVEVSTSKTGKHGHAKCHFVAIDI 1401
Query: 252 FNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGT 428
FNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G ++DL++P D L T
Sbjct: 1402 FNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLRLPSDEALLT 1461
Query: 429 QLRTDFDSGKELLCTVLKSCGEECVIAVK 515
Q++ F GK+L+ TV+ + GEE + A+K
Sbjct: 1462 QIKDGFAEGKDLIVTVMSAMGEEQICALK 1490
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 145 bits (351), Expect(2) = 4e-40
Identities = 64/114 (56%), Positives = 89/114 (78%), Gaps = 1/114 (0%)
Frame = +3
Query: 177 KIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDG 356
K+VE+STSKTGKHGHAK H V IDIF KK EDI PS+HN DVPHV R +YQL DIS+DG
Sbjct: 74 KVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDG 133
Query: 357 YLTLMADNGDLREDLKIP-DGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 515
+++L+ +NG+ ++DL++P D +L +Q++ F GK+L+ TV+ + GEE + A+K
Sbjct: 134 FVSLLTENGNTKDDLRLPTDDNLLSQIKDGFGEGKDLVVTVMSAMGEEQICALK 187
Score = 37.9 bits (84), Expect(2) = 4e-40
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3
Query: 111 TFPMQCSALRKNGFVMLKGRPCK 179
T+P Q +RKNG++++K RPCK
Sbjct: 20 TYPQQAGTIRKNGYIVIKNRPCK 42
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 54.4 bits (125), Expect = 1e-07
Identities = 25/63 (39%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Frame = +3
Query: 309 HVKREDYQLTDISDDG-YLTLMADNGDLREDLKIPDGD-LGTQLRTDFDSGKELLCTVLK 482
H+ R +YQL DIS+DG +++L+ ++G+ ++DL +P D L Q++T F GK+++ TV+
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKDVVVTVMS 105
Query: 483 SCG 491
+ G
Sbjct: 106 AMG 108
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 31.5 bits (68), Expect = 0.82
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +3
Query: 372 ADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKANTA 527
A GD DL IPD + TQ+ T+ S C V S G C AV A+ +
Sbjct: 248 ASTGDRSVDLPIPDNETNTQI-TEMRSNGAEKCDVQLSGGTLCSEAVPASNS 298
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +3
Query: 300 DVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD 419
D P+ RE +++ ++ D Y+T D+G L ED+K+ G+
Sbjct: 38 DFPNFIREGFEVKVVTSDNYIT--RDSGLLYEDIKVGTGN 75
>02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915
Length = 1270
Score = 29.5 bits (63), Expect = 3.3
Identities = 25/94 (26%), Positives = 46/94 (48%)
Frame = -3
Query: 497 LLTAGFQHGAQQFLAAVEVSTQLCAEVTIRDFEVLTQVTVVSHQGQVAIIRDISQLVVFA 318
++ AG H ++ FLA ++ T + +E +++ VL+ +T ++ V D L V
Sbjct: 1035 MVEAGTHHTSKPFLAPLKELT-IYSESSVQSMAVLSSLTSLTRLRLV----DCDNLTV-- 1087
Query: 317 LHVGYVHVVCGGTDIFILFTIEDINPNQVNFSVA 216
VG+ V+ G +++ DI+ N SVA
Sbjct: 1088 --VGFDPVMTGSLSELVIYNKPDIDDNNHRCSVA 1119
>12_01_1024 -
10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +3
Query: 378 NGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKAN 521
N D D I G GTQ D +L +VLKS + CV A KA+
Sbjct: 730 NRDTDIDHFIELGKSGTQCSGYLDLVDDLTTSVLKSSSDTCVSAAKAS 777
>08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695
Length = 664
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 408 PDGDLGTQLRTDFDSGKELLCTVLKSCGE 494
PDGDL ++R +SGKEL L G+
Sbjct: 206 PDGDLKDKMRDAMESGKELTSNALALIGK 234
>11_06_0437 - 23533218-23536382
Length = 1054
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 219 HAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDG 356
HA LV + I N +K DI D+ H K+E Y+L + G
Sbjct: 179 HACRKLVDLVIKNKEKTADIENKEKKADIEHKKKEPYKLAIVGTGG 224
>05_01_0297 - 2314687-2316021
Length = 444
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +3
Query: 333 LTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCG 491
+ D + +G L + AD D+R + DGD G +LR F S +LL V S G
Sbjct: 91 VVDCTGEGVLFVEAD-ADVRLEELEEDGDGGGELRPPFPSMDQLLLDVEGSGG 142
>03_05_1012 +
29670310-29670512,29670856-29671001,29671169-29671245,
29671329-29671451,29671558-29671660,29672100-29672173,
29672249-29672329,29672411-29672563,29672780-29672881
Length = 353
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 323 FALHVGYVHVV-CGGTDIFILFTIEDINPNQVNFSVAVLSGFGCGHFNNLAW 171
F L GY+ + GT++F F + NP+ + ++ G C F+ LA+
Sbjct: 63 FYLETGYIGIEEKTGTELFYYFVESETNPDTDPLVLWLVGGPRCSAFSGLAY 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,895,126
Number of Sequences: 37544
Number of extensions: 458117
Number of successful extensions: 1275
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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