Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_B07
         (445 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   3.0  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      20   9.2  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = -3

Query: 224 LPKPIHLHHQRLLYP--NFPQEILRTRHPLLANQGLLSVCQPLYCDDY*NKEISLIIA 57
           LP P H HHQ    P    P +I    +PL  NQ L   C      D   KE   II+
Sbjct: 735 LPPPPHPHHQPPRNPVGTNPHDI---NNPLSVNQ-LTGQCVRNDSSDTNGKETRSIIS 788


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = -3

Query: 224 LPKPIHLHHQRLLYP--NFPQEILRTRHPLLANQGLLSVCQPLYCDDY*NKEISLIIA 57
           LP P H HHQ    P    P +I    +PL  NQ L   C      D   KE   II+
Sbjct: 627 LPPPPHPHHQPPRNPVGTNPHDI---NNPLSVNQ-LTGQCVRNDSSDTNGKETRSIIS 680


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 233 PSCLPKPI 210
           P C+PKPI
Sbjct: 53  PGCVPKPI 60


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,797
Number of Sequences: 336
Number of extensions: 1410
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9985735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)