Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_B07
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006714-3|AAK29724.3|   82|Caenorhabditis elegans Hypothetical ...    50   1e-06
Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z83122-10|CAB05601.1|  896|Caenorhabditis elegans Hypothetical p...    27   4.6  
Z83122-9|CAB05598.1|  906|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AL034488-12|CAD31697.1|  450|Caenorhabditis elegans Hypothetical...    27   4.6  
AF039053-11|AAC25879.1|  301|Caenorhabditis elegans Serpentine r...    27   4.6  
L13200-3|AAA28192.1|  304|Caenorhabditis elegans C.elegans chrom...    27   6.1  
Z81135-3|CAB03456.1|  251|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical p...    27   8.1  

>AC006714-3|AAK29724.3|   82|Caenorhabditis elegans Hypothetical
           protein Y119D3B.15 protein.
          Length = 82

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 16/42 (38%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
 Frame = +2

Query: 167 PAENWGTE-DADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEK 289
           P + W    + +++DV+VWEDNW+D+  + +F++QL+++L K
Sbjct: 35  PVQEWAERAEGEEDDVNVWEDNWDDETHESEFSKQLKEELRK 76


>Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical
           protein D1081.3 protein.
          Length = 752

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 188 EDADDEDVSVWEDNWEDDVIQDDF 259
           +D DDED   +ED+ E+DVI D++
Sbjct: 718 DDDDDEDCDDFEDD-EEDVIDDEY 740


>Z83122-10|CAB05601.1|  896|Caenorhabditis elegans Hypothetical
           protein R11A5.1b protein.
          Length = 896

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 188 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 304
           ED DDED    ED  E+D  ++D  ++  +  E+ +D +
Sbjct: 576 EDDDDEDEEEDEDEEEEDEDEEDEEEEENESEEEEEDDE 614


>Z83122-9|CAB05598.1|  906|Caenorhabditis elegans Hypothetical
           protein R11A5.1a protein.
          Length = 906

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 188 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 304
           ED DDED    ED  E+D  ++D  ++  +  E+ +D +
Sbjct: 586 EDDDDEDEEEDEDEEEEDEDEEDEEEEENESEEEEEDDE 624


>AL034488-12|CAD31697.1|  450|Caenorhabditis elegans Hypothetical
           protein Y54G11A.14 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +2

Query: 188 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLE 286
           +D ++ED    ED  ED+   D+ N++++++ E
Sbjct: 59  DDEEEEDEDEEEDEAEDEAEDDEENEEVKEEKE 91


>AF039053-11|AAC25879.1|  301|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 19 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 127 VYFLFVSHYTVMIIEIRKYHLL 62
           VY LFV  Y+++  E+RKYH L
Sbjct: 63  VYLLFVIAYSLIPEELRKYHNL 84


>L13200-3|AAA28192.1|  304|Caenorhabditis elegans C.elegans
           chromodomain proteinprotein 1 protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 167 PAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQ-QLEKLKDQK 304
           P E    E  D+E+    ED  ED+ +++D  ++    QLE  K++K
Sbjct: 165 PEEEESVEGEDEEESQEVEDLKEDEKMEEDEKEEEEDVQLESEKNEK 211


>Z81135-3|CAB03456.1|  251|Caenorhabditis elegans Hypothetical
           protein W01G7.4 protein.
          Length = 251

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 194 ADDEDVSVWEDNWEDD 241
           ADDED S  EDNW +D
Sbjct: 171 ADDEDDSNDEDNWRND 186


>U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical
           protein K07E3.1 protein.
          Length = 1061

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 224 DNWEDDVIQDDFNQQLRQQLEKLKDQK 304
           D  +DDV  DD + + R+Q  +LK QK
Sbjct: 664 DEEDDDVASDDPDAEKRRQKRRLKRQK 690


>U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical
           protein T02G5.12 protein.
          Length = 556

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +2

Query: 197 DDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKL 292
           DD+D   + D +ED+V + D+N++  +++  L
Sbjct: 190 DDDDDGEYNDVFEDEVKKIDYNKRFEEKVSLL 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,886,100
Number of Sequences: 27780
Number of extensions: 127124
Number of successful extensions: 481
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)