Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_B06
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05)                     75   6e-14
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)               31   0.92 
SB_43953| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83)                    30   2.1  
SB_56714| Best HMM Match : 7tm_3 (HMM E-Value=1.6e-18)                 29   2.8  
SB_52562| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_5495| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  
SB_8578| Best HMM Match : DUF807 (HMM E-Value=6.7)                     28   6.5  
SB_12316| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05)
          Length = 226

 Score = 74.9 bits (176), Expect = 6e-14
 Identities = 60/217 (27%), Positives = 100/217 (46%), Gaps = 16/217 (7%)
 Frame = +1

Query: 73  KXVVIFGSTGVIGLNAVEAALKKGLEVRAFVRDPAKLPEHLKDKVEIVKGNVLEPDSVHE 252
           K VV+FG TG  GL+ V+ AL +G  V    R P K+     D + +VKG++ + +S   
Sbjct: 8   KKVVVFGGTGKTGLHVVQQALDRGHHVTVIARSPEKMTIK-NDNLVVVKGDIFDIESFSP 66

Query: 253 AVEGTDAVVITLGT--RNDLAPTSDLSEGTKNIIDAMRAKNVKTV-------SACLSAFL 405
           + EG DA++ T GT   +   PT++ SE  K I+  M+   V  +       +       
Sbjct: 67  SFEGKDAILSTFGTAFHSIFNPTTEYSESMKGILQTMKKHGVNRLIVETSWGTEATPGGP 126

Query: 406 FYEQEKVPPIFVN-LNEDHKRMFQAL-KDSGLNWIAAFPPHFTDDPSR-----EMIIEVN 564
           F  +  + P+ +N + +D   M   + K+ G+N+    P   T+DP       E  +  N
Sbjct: 127 FSLEWIIKPLLLNGMLKDMGVMEHMIEKEEGINYTIVRPAGLTNDPPNGKYKIEEGVYCN 186

Query: 565 PEKTPGRTIAKCDLGTFLVDALSEPKYYKAAIGICNV 675
              T  R I + D+   +++ L   +Y K  I I  +
Sbjct: 187 KTGTTHR-IPRADVAACMLNCLDTDQYDKKGIAIATL 222


>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
          Length = 1290

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = -2

Query: 293 VPRVMTTASVPSTASCTESG--SRTFPLTISTLSLRCSGSFAGSRTNARTSRPFLRAAST 120
           V R +   S P+ AS   S   S   P   STL+ R  G F+G+ + A T     RA+S 
Sbjct: 489 VTRKVAGKSSPANASVIASPEVSSPQPFGTSTLASRVIGPFSGALSGALTKTTLARASSP 548

Query: 119 AFKPI-TPVEPKITTXF 72
              P+   V   I T F
Sbjct: 549 TPSPMRLGVHTSIDTSF 565


>SB_43953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 517 PHFTDDPSREMIIEVNPEKTPGRTIAKCDLGTF 615
           P FT  P     I V P +TPG     CD+  F
Sbjct: 188 PLFTSQPKHVQNILVRPSRTPGPAFYICDINAF 220


>SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83)
          Length = 957

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 445 LNEDHKRMFQALKDSGLNWIAAFPPHFTDDPSREMIIEVNPEKTP 579
           + E ++R+ + LKD G+     F P  TD+   E ++EV  E+ P
Sbjct: 250 IQEKNERIKKILKDLGIEE-KVFEPTMTDEEVPERLLEVRDEEVP 293


>SB_56714| Best HMM Match : 7tm_3 (HMM E-Value=1.6e-18)
          Length = 484

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = +1

Query: 385 ACLSAFLFYEQEKVPPIFVNLNEDHKRMFQALKDSGLNWIAAFPPHFTDD 534
           A LS F  Y+  K+P    N NE    +F AL    L+WI  +P HF  D
Sbjct: 333 AGLSTFYAYKARKIPE---NFNEARGIVF-ALYILILSWIVYYPVHFALD 378


>SB_52562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1490

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = -2

Query: 290  PRVMTTASVPSTASCTESGSRTFPLT 213
            PR +T+++V S+ S +++GS T PLT
Sbjct: 1342 PRPITSSTVTSSMSSSDAGSSTTPLT 1367


>SB_5495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
 Frame = -2

Query: 323 KSEVGARSFLVPRVMTTASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNARTSR 144
           KSE+  +  L   +  + S+P + S  ESG+   P T++   L  S   A        + 
Sbjct: 89  KSEIKNKPMLHSDIPDSKSIPPSTSFPESGAVFSPFTLTAAGLYPSAVLA--HPFVFNNP 146

Query: 143 PFLRAASTAFK-PITPVEPKITTXFILSLT 57
            FLR      K P +P  P  ++  I   T
Sbjct: 147 EFLREHQETLKYPTSPSAPSSSSPIIFRRT 176


>SB_8578| Best HMM Match : DUF807 (HMM E-Value=6.7)
          Length = 139

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
 Frame = -2

Query: 323 KSEVGARSFLVPRVMTTASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNARTSR 144
           KSE+  +  L   +  + S+P + S  ESG+   P T++   L  S   A        + 
Sbjct: 12  KSEIKNKPMLHSDIPDSKSIPPSTSFPESGAVFSPFTLTAAGLYPSAVLA--HPFVFNNP 69

Query: 143 PFLRAASTAFK-PITPVEPKITTXFILSLT 57
            FLR      K P +P  P  ++  I   T
Sbjct: 70  EFLREHQETLKYPTSPSAPSSSSPIIFRRT 99


>SB_12316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 676

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +1

Query: 181 LPEHLKDKVEIVKGNVLEPDSVHEAVEGTDAVVITLG-TRNDLAPTSDLSEGTKNIIDAM 357
           L + L D  E   G + E   VH+AVE       + G  + D+A   +  E  K  ID M
Sbjct: 133 LDQELADANEAYVGKIEEFKEVHKAVEQLRTSGFSTGEIKKDIANMEEEHEQLKKRIDRM 192

Query: 358 RAK 366
           + K
Sbjct: 193 QKK 195


>SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1665

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 169 DPAKLPEHLKDKVEIVKGNVLEPDSV 246
           DPAK    +KD  + ++GN+L PD V
Sbjct: 341 DPAKEQPGIKDNDDDIEGNLLLPDGV 366


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,643,474
Number of Sequences: 59808
Number of extensions: 425309
Number of successful extensions: 1144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)