Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_B03
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 300 7e-83
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 172 2e-44
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 160 8e-41
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 127 9e-31
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 86 3e-18
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 82 3e-17
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 75 4e-15
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 53 2e-08
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.047
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.25
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 29 0.33
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 0.58
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 0.76
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.0
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 1.3
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 1.3
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 2.3
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 3.1
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 4.1
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 25 4.1
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 25 5.4
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces... 25 5.4
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 5.4
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 5.4
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 5.4
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 5.4
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 22 9.0
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 24 9.4
SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr... 24 9.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 300 bits (736), Expect = 7e-83
Identities = 137/147 (93%), Positives = 141/147 (95%)
Frame = +1
Query: 7 APRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 186
APRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKI
Sbjct: 26 APRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKI 85
Query: 187 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 366
WHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLYAS
Sbjct: 86 WHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYAS 145
Query: 367 GRTTGIVLDSGDGVSHTVPIYXGYALP 447
GRTTGIVLDSGDGV+HTVPIY GYALP
Sbjct: 146 GRTTGIVLDSGDGVTHTVPIYEGYALP 172
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 172 bits (418), Expect = 2e-44
Identities = 76/147 (51%), Positives = 108/147 (73%), Gaps = 1/147 (0%)
Frame = +1
Query: 10 PRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIW 189
P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW
Sbjct: 31 PKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIW 90
Query: 190 HHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 366
+ + ++ L PEEHP+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS
Sbjct: 91 SYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYAS 150
Query: 367 GRTTGIVLDSGDGVSHTVPIYXGYALP 447
RTTGIVL+ GDG++H+VPIY G+++P
Sbjct: 151 ARTTGIVLECGDGLTHSVPIYDGFSIP 177
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 160 bits (389), Expect = 8e-41
Identities = 74/147 (50%), Positives = 105/147 (71%), Gaps = 2/147 (1%)
Frame = +1
Query: 10 PRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEK 183
PR FPSIVGRP R + + KD VGDEA++ R +L +KYP+E+GI+ ++++M +
Sbjct: 25 PRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQ 84
Query: 184 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA 363
+W +TF+ +L++ P +LLTE P+NP ANREKM + MFE + +YVAIQAVLSLYA
Sbjct: 85 LWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYA 144
Query: 364 SGRTTGIVLDSGDGVSHTVPIYXGYAL 444
G ++G+V+DSGDGV+H VP+Y L
Sbjct: 145 QGLSSGVVVDSGDGVTHIVPVYESVVL 171
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 127 bits (306), Expect = 9e-31
Identities = 60/130 (46%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Frame = +1
Query: 82 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 258
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 259 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSH 414
LNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 415 TVPIYXGYAL 444
+P+ GY +
Sbjct: 193 IIPVAEGYVI 202
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 85.8 bits (203), Expect = 3e-18
Identities = 45/145 (31%), Positives = 83/145 (57%), Gaps = 3/145 (2%)
Frame = +1
Query: 10 PRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKI 186
P+ VF ++V R R + + + + VG++ + G ++ + P E +++NWD ME++
Sbjct: 46 PKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQV 101
Query: 187 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 366
+TF +L + EHP+ +TE NP R MT+++FE +N P++ I + S Y +
Sbjct: 102 LDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHN 160
Query: 367 GR--TTGIVLDSGDGVSHTVPIYXG 435
+ ++GIVL+ G+ SH +P+ G
Sbjct: 161 TKPSSSGIVLNLGNAASHVIPVLNG 185
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 82.2 bits (194), Expect = 3e-17
Identities = 40/107 (37%), Positives = 58/107 (54%)
Frame = +1
Query: 124 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 303
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 304 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYXGYAL 444
E+ PA Y+A Q + +ASG+ T ++D G S IY G+ L
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 75.4 bits (177), Expect = 4e-15
Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 2/133 (1%)
Frame = +1
Query: 43 PRHQGVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 216
P + GV + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 217 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 396
V P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDI 156
Query: 397 GDGVSHTVPIYXG 435
G + P+ G
Sbjct: 157 GSDNASVTPVVDG 169
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 53.2 bits (122), Expect = 2e-08
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Frame = +1
Query: 139 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 306
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 307 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYXG 435
P +A + ++ LYA G G+V+D G + PI G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDG 214
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.047
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 199 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 342
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.25
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 344 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 448
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 29.1 bits (62), Expect = 0.33
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 10 PRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 141
PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 506 PRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 0.58
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 106 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 17
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 0.76
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 323 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTK 433
P T+P P T PV P S P+ P P PS++
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSE 1072
Score = 24.2 bits (50), Expect = 9.4
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 320 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTK 433
PP T+P P P VP + P P P PS++
Sbjct: 1212 PPSTAPPVPTPSAGLPPVPVPTAKAP----PVPAPSSE 1245
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 1.0
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +2
Query: 299 CSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDT 439
C+ ++ PP T S S P VPP S T +T P P ST T
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTS--TSSTSIPIPPTSTSST 158
Score = 27.5 bits (58), Expect = 1.0
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +2
Query: 299 CSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDT 439
C+ ++ PP T S S P VPP S T +T P P ST T
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTS--TSSTSIPIPPTSTSST 215
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 1.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 344 PCSRCTRPVVPPVSCWTPATVSPTPCPST 430
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 1.3
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 320 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 427
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 2.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 241 LLTEAPLNPKANREKMTQIMFETFN 315
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 3.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 135 FEGQDTSFALCLISYIRVLLSHTDHHA 55
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 4.1
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 255 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 404
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +3
Query: 12 SRRVPLDRGKAPPSGRDGRYGTEGLLCRR*GTEQKRYPDPQIPHR 146
S +VP R PP R +Y E G Q+ + P++ +R
Sbjct: 207 SLQVPPSRNVPPPVTRPNQYNPEPNFSLSSGYPQQHFSQPELQNR 251
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 25.0 bits (52), Expect = 5.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 360 RVRSYHRYRAGLRRRCLPHRAHLXR 434
R RS HR+ G RR P+R HL R
Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHLSR 164
>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 25.0 bits (52), Expect = 5.4
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 324 HVRRHPSRALAVRVRSYHRYRAGLRRRCLPHRAHLXRIRTPP 449
+VR HP A+ +R H Y +G C+ ++ R+ P
Sbjct: 248 YVRLHPGEAVFLRALDPHAYVSGNIIECMAASDNVIRLGFTP 289
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 5.4
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 359 TRPVVPPVSCWTPATVSPTPCPSTKDT 439
T P S TPA V P P PST T
Sbjct: 833 TSPYATTSSHITPADVHPLPPPSTSTT 859
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 5.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 341 KPCSRCTRPVVPPVSCWTPATVSPTPCP 424
KP S+ TRP +P + T +V P P P
Sbjct: 65 KPSSKATRPYIPSYTRLT-YSVPPLPIP 91
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.0 bits (52), Expect = 5.4
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 302 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 448
S+H + +PS + P+ P ++ W P T PT P + + + P
Sbjct: 244 SQHKSVNYSVTPSSINNHTAVPLSPTLAVWLPMT-QPTFQPPSANVYQP 291
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 58 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 144
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 21.8 bits (44), Expect(2) = 9.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 121 ILTLKYPIEHGIVTN 165
I+T YP HGIV+N
Sbjct: 125 IVTGLYPESHGIVSN 139
Score = 20.6 bits (41), Expect(2) = 9.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 160 TNWDDMEKIWHHTFYNELRVAPEEHP 237
T WD E IW + N +R A P
Sbjct: 162 TWWDKGEPIWVNAERNNVRSAVHMWP 187
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -3
Query: 423 GHGVGDTVAGVQHDTGGTTGR 361
G G GDTV GG GR
Sbjct: 139 GRGAGDTVVSRSSGAGGARGR 159
>SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
3|||Manual
Length = 171
Score = 24.2 bits (50), Expect = 9.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 265 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 408
P+ E ++I F + Y+AI A+L +YA R +++ G GV
Sbjct: 44 PRNFSEAQSRISFNFSRFSSNYLAIIAMLVIYALIRNPLLLIVIGIGV 91
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,118,802
Number of Sequences: 5004
Number of extensions: 45882
Number of successful extensions: 165
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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