Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_A22
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   142   5e-35
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   142   5e-35
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    27   2.2  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    27   2.9  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   3.8  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   5.1  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  142 bits (343), Expect = 5e-35
 Identities = 65/120 (54%), Positives = 84/120 (70%)
 Frame = +1

Query: 157 QNIRKLIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXX 336
           QNIRKL+KDGLVI+KP  +HSR R+RK   A+R GRH G+GKR+GTA ARMP   +W   
Sbjct: 39  QNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRR 98

Query: 337 XXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 516
                        + KID+HLYH+LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q
Sbjct: 99  QRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158



 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 19/35 (54%), Positives = 27/35 (77%)
 Frame = +3

Query: 48  SLKLXXRLAASVMXCGKXQVWLDPNXINXLANTNS 152
           +L+   RLAASV+ CGK +VW+DPN I+ ++N NS
Sbjct: 3   NLRTQKRLAASVLKCGKRKVWMDPNEISEISNANS 37


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  142 bits (343), Expect = 5e-35
 Identities = 65/120 (54%), Positives = 84/120 (70%)
 Frame = +1

Query: 157 QNIRKLIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXX 336
           QN+RKLIKDGLVI+KP  +HSR R+RK   A+R GRH G+GKR+GTA ARMP   +W   
Sbjct: 39  QNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRR 98

Query: 337 XXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 516
                        + KID+HLYH+LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q
Sbjct: 99  QRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158



 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 19/35 (54%), Positives = 27/35 (77%)
 Frame = +3

Query: 48  SLKLXXRLAASVMXCGKXQVWLDPNXINXLANTNS 152
           +L+   RLAASV+ CGK +VW+DPN I+ ++N NS
Sbjct: 3   NLRTQKRLAASVLKCGKRKVWMDPNEISEISNANS 37


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 145 PTPVQNIRKLIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 273
           P  ++++R  +KD +   +PV+V S A   ++T     G   G
Sbjct: 137 PEKLESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
 Frame = -1

Query: 591 FLLLGGNT-----FLAALACLLYFIAAGL 520
           F+  GGN      FL A  C+LY I+AGL
Sbjct: 195 FIYRGGNVMNLQWFLIASTCILYLISAGL 223


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 322 VPSVAYAHWQYLFSYQS 272
           +PSV YA WQ L  Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 482 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 390
           AF LW+YS+   L+L       +    W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,359
Number of Sequences: 5004
Number of extensions: 45363
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)