Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_A22
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 159 1e-39
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 159 1e-39
07_03_1639 + 28305801-28305958,28306240-28306249 33 0.18
05_07_0333 - 29351372-29351665,29351786-29351928,29352374-293524... 31 0.97
03_02_0050 + 5272471-5274861 30 1.3
01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416 29 3.0
04_04_1687 - 35365766-35366356,35367137-35368135 29 3.9
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942 28 5.2
02_05_0067 + 25557975-25558553 27 9.1
02_03_0297 - 17408902-17409045,17409134-17409304,17410563-174106... 27 9.1
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 159 bits (387), Expect = 1e-39
Identities = 73/120 (60%), Positives = 87/120 (72%)
Frame = +1
Query: 157 QNIRKLIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXX 336
QNIRKL+KDG +IKKP +HSR+R R+ EA++KGRH G+GKRRGT AR+P K LW
Sbjct: 39 QNIRKLVKDGFIIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRR 98
Query: 337 XXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 516
AKKID+H+YH +YMK KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 99 MRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/35 (60%), Positives = 27/35 (77%)
Frame = +3
Query: 48 SLKLXXRLAASVMXCGKXQVWLDPNXINXLANTNS 152
SLKL RLA+SV+ CGK +VWLDPN +N ++ NS
Sbjct: 3 SLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANS 37
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 159 bits (387), Expect = 1e-39
Identities = 73/120 (60%), Positives = 87/120 (72%)
Frame = +1
Query: 157 QNIRKLIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXX 336
QNIRKL+KDG +IKKP +HSR+R R+ EA++KGRH G+GKRRGT AR+P K LW
Sbjct: 39 QNIRKLVKDGFIIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRR 98
Query: 337 XXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 516
AKKID+H+YH +YMK KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 99 MRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = +3
Query: 48 SLKLXXRLAASVMXCGKXQVWLDPNXINXLANTNS 152
SLKL RLAASV+ CGK +VWLDPN +N ++ NS
Sbjct: 3 SLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANS 37
>07_03_1639 + 28305801-28305958,28306240-28306249
Length = 55
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 415 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 516
MK KGN+ NKR + +AEKAR + LSDQ
Sbjct: 1 MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQ 34
>05_07_0333 -
29351372-29351665,29351786-29351928,29352374-29352434,
29352950-29353034,29353254-29353292,29353487-29353557,
29353640-29353735,29353869-29354017,29354106-29354175,
29354752-29354792,29354902-29354977
Length = 374
Score = 30.7 bits (66), Expect = 0.97
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +1
Query: 103 RCGWIQMXSMXSQTPTPVQNIRKLIKDGLVIKKPVA-VHSRARVRKNTEARRKGRHCGFG 279
R GW M +M Q P P N L K K P+ S ++ + + GR G
Sbjct: 236 RSGWSDMDAMRRQVPPPAINAGSLAKQ----KSPIGHEQSTSKDAVFSSSTFLGRSSGSS 291
Query: 280 KRRGTANARMPQKE 321
+R +++R P E
Sbjct: 292 RRPAVSSSREPSTE 305
>03_02_0050 + 5272471-5274861
Length = 796
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 588 LLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLEHI 430
LLL L+ +CL + L +HL P LLS +P+D L H H +L H+
Sbjct: 79 LLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHL 132
>01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416
Length = 302
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 163 IRKLIKD-GLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTA 297
+ L +D G+ +K+ H + + R+GRH G+G+RR +A
Sbjct: 204 VSPLARDWGITLKEDEKQHGTSSSAADGGGLRRGRHDGWGRRRSSA 249
>04_04_1687 - 35365766-35366356,35367137-35368135
Length = 529
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 192 HQETCSSPLPRPCPQKHR 245
H E C +PLP P P HR
Sbjct: 53 HAEQCPAPLPDPLPSAHR 70
>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
Length = 379
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +1
Query: 172 LIKDGLVIKKPVAVHSRARVRKNTEARRKGRHC---GFGKRRGTANAR 306
L KDG ++ + +RA R +T+A R+ HC G+G RR + R
Sbjct: 172 LPKDGRNLQAGAQLCARAASRGHTDALRELGHCVSDGYGVRRSLSGGR 219
>02_05_0067 + 25557975-25558553
Length = 192
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 451 HACS*THYPSPSCRVSGIDACQSSW 377
H C H P CR + +DA Q+ W
Sbjct: 148 HGCDKEHAYQPPCRPNVVDASQAVW 172
>02_03_0297 -
17408902-17409045,17409134-17409304,17410563-17410664,
17412605-17412718,17413095-17413178,17413669-17413808,
17414429-17414560,17415430-17415618,17415736-17415801,
17415905-17415938
Length = 391
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 562 RGACVPPLLYCGGP 521
+GACV P+ YCG P
Sbjct: 152 KGACVDPVAYCGTP 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,722,443
Number of Sequences: 37544
Number of extensions: 355962
Number of successful extensions: 1010
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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