Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_A22
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   156   1e-38
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical p...    27   8.2  
AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical ...    27   8.2  
AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical ...    27   8.2  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  156 bits (378), Expect = 1e-38
 Identities = 71/120 (59%), Positives = 87/120 (72%)
 Frame = +1

Query: 157 QNIRKLIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXX 336
           Q+IR+L+ DGL+I+KPV VHSR R R+  EARRKGRH G+GKRRGTANARMP+K LW   
Sbjct: 39  QSIRRLVNDGLIIRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRR 98

Query: 337 XXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 516
                        AKK+D+HLYH LY++AKGN FKNK+ L+EYI +KK E  R K L+DQ
Sbjct: 99  MRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 17/35 (48%), Positives = 27/35 (77%)
 Frame = +3

Query: 48  SLKLXXRLAASVMXCGKXQVWLDPNXINXLANTNS 152
           +L+L  RLA++V+ CGK +VWLDPN ++ ++  NS
Sbjct: 3   NLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANS 37


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 589 PPSWRQYVPRGACVPPL 539
           P SW QY P+G C+ P+
Sbjct: 221 PNSWHQYQPKGTCIQPV 237


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 157  QNIRKLIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 273
            +N+R L+ D   +K  V  H     R ++E R+K R  G
Sbjct: 1061 KNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 542 RRHASAARNVLPPRRRNCCRPSLXKT 619
           RRHAS     +PP   NC +P+  +T
Sbjct: 14  RRHASEGGTPIPPTPANCGKPTKKRT 39


>Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.14 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -3

Query: 379 WQFCTSGAIFLEPFVFVPIVPSVAYAHWQYLFSYQSHSD-DPFYVPLCFCGHGR 221
           W +C   A+FL    F+P     A  +  Y F Y S  D D   + L F  + R
Sbjct: 126 WLYCLGLAMFLLILFFIPFFGGCADNYSFYDFDYTSECDPDDHPITLMFDEYAR 179


>AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6b protein.
          Length = 547

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 263 RPFLRASVFLRTRAREWTATGFLMTRPSLISLRMF 159
           RP   AS F + RA  W A+  ++  P+L+ ++ F
Sbjct: 262 RPRFGASFFQQIRALTWRASKTVLREPTLLKVQTF 296


>AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6a protein.
          Length = 684

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 263 RPFLRASVFLRTRAREWTATGFLMTRPSLISLRMF 159
           RP   AS F + RA  W A+  ++  P+L+ ++ F
Sbjct: 399 RPRFGASFFQQIRALTWRASKTVLREPTLLKVQTF 433


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,370,485
Number of Sequences: 27780
Number of extensions: 275512
Number of successful extensions: 711
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)