Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_A20
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    27   2.8  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   4.9  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    25   6.4  

>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -1

Query: 84  SDTXIXVHGLLHTIIFQNELNL 19
           +D+   ++ +LH+++FQNEL L
Sbjct: 462 NDSVFSMYKVLHSLVFQNELGL 483


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 132  SPGRXLGAVERYAGALSDTXIXVHGLLHTIIFQNELNLLGI 10
            S G  L A E   G  S   I ++GL+H  + Q E + LGI
Sbjct: 2227 SQGVNLPAFEVAQGVNSILPIFLYGLMHGTMDQREQSALGI 2267


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 539 QQYNNLTRIFTRQIGPG 489
           +QY NL   FTR++ PG
Sbjct: 126 RQYKNLAEFFTRKLKPG 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,297,557
Number of Sequences: 5004
Number of extensions: 43181
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)