Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_A19
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    28   0.86 
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    25   4.6  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    25   6.1  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.1  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   8.0  

>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 27.9 bits (59), Expect = 0.86
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 335 SIPIAFFYPFILVTAFTVL*YFIDCYFSNTFLLLMFV 445
           S P+A F+ F+L     ++ Y +  +F+++F+LL  V
Sbjct: 46  SHPVALFF-FLLFRTGAIVAYILGMFFTSSFMLLFIV 81


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 81  RDLYWLFVSIICYIIV 34
           R LYW+FV++ C  ++
Sbjct: 135 RILYWIFVAVACIFVI 150


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 325 IVFKHSYCIFLSFYSRDCFYSIVIFHRLLFFEYIFIVDVCRYFNKFL 465
           +V KHS    LSF+    F SI     +LF  Y  ++    +F K+L
Sbjct: 1   MVLKHSVTYNLSFFISFTFSSIFFSSLILFLVYKSVLSKL-FFIKYL 46


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = -1

Query: 96  LFILGRDL-----YWLFVSIICYIIVLMGCWFXLVVN 1
           LF+LG ++     +W   +++CY+I  + C    VVN
Sbjct: 296 LFLLGLNIGSTTGHWAHANVLCYLIFGILCIAGFVVN 332


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 301 LNAQFINIIVFKHSYCIFLSFYSRDCFYSIVI 396
           L A F   + FK+S+C+FL   +R   ++++I
Sbjct: 510 LLAVFRPFVGFKNSFCVFLVALTRVVSFALLI 541


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,475,729
Number of Sequences: 5004
Number of extensions: 22775
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)